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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:229.7 nTPM
FANTOM5:78.3 Scaled Tags Per Million
Pig:349.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA014429
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

229.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 229.7
Samples: 246

Max nTPM: 1230.5
Min nTPM: 0.7
Std nTPM: 172.0
Median nTPM: 210.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1230.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 733.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 699.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 654.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 653.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 635.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 624.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 610.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 592.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 588.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 583.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 576.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 538.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 511.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 503.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 500.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 493.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 487.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 480.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 474.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 469.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 468.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 466.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 448.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 438.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 435.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 434.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 431.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 428.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 424.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 418.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 415.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 409.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 403.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 392.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 392.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 388.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 385.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 383.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 379.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 377.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 376.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 375.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 373.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 373.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 367.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 366.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 365.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 364.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 363.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 361.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 359.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 356.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 356.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 355.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 354.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 354.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 350.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 348.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 347.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 344.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 341.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 335.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 335.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 330.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 330.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 326.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 321.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 317.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 315.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 313.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 312.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 311.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 306.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 299.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 299.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 298.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 297.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 292.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 291.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 289.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 288.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 285.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 281.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 280.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 275.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 269.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 265.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 260.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 259.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 258.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 255.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 255.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 254.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 252.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 248.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 245.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 245.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 243.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 242.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 241.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 241.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 238.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 238.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 236.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 235.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 233.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 231.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 230.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 230.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 229.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 229.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 227.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 226.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 225.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 224.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 223.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 223.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 219.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 219.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 219.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 213.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 211.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 210.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 200.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 192.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 191.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 191.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 189.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 188.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 187.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 186.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 184.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 181.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 181.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 180.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 176.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 175.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 173.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 171.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 171.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 170.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 170.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 167.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 162.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 161.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 161.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 161.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 160.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 158.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 154.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 152.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 152.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 151.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 150.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 143.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 141.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 140.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 135.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 130.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 129.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 127.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 126.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 124.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 121.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 118.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 118.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 117.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 116.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 115.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 114.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 113.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 113.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 113.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 113.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 109.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 107.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 107.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 107.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 107.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 106.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 103.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 101.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 95.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 92.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 91.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 90.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 89.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 89.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 86.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 86.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 85.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 84.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 80.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 77.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 74.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 73.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 72.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 69.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 66.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 65.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 64.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 63.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 62.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 61.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 61.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 61.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 54.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 54.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 54.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 52.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 48.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 45.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 44.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 42.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 40.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 40.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 40.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 39.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 38.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 35.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 35.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 33.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 31.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 31.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 30.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 30.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 26.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 23.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 22.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 22.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 20.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 20.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 19.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 18.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 16.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 14.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 13.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 11.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 10.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 10.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 9.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 5.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 4.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 4.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 0.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

78.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 78.3
FF:10164-103B2 76 years, female 78.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

349.3
Pig sample Sample description nTPM
Caudate
nTPM: 349.3
Samples: 4

Max nTPM: 426.6
Min nTPM: 274.3
Sample A Female 274.3
Sample B Female 308.2
Sample C Male 426.6
Sample D Male 388.1

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