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  • CX3CL1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:45.7 nTPM
FANTOM5:54.2 Scaled Tags Per Million
Pig:188.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040361Antibody CAB026192
Glial cells LowMedium
Neuronal cells HighLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.7
Samples: 246

Max nTPM: 123.7
Min nTPM: 7.8
Std nTPM: 24.7
Median nTPM: 42.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 123.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 121.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 120.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 116.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 108.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 105.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 104.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 104.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 101.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 97.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 95.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 88.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 87.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 87.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 84.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 82.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 81.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 80.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 80.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 79.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 79.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 79.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 79.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 78.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 77.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 77.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 77.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 76.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 76.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 75.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 75.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 74.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 74.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 74.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 72.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 71.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 71.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 71.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 71.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 70.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 70.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 70.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 70.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 69.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 69.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 69.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 67.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 67.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 66.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 66.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 66.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 66.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 65.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 65.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 65.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 65.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 65.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 65.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 64.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 64.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 63.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 63.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 62.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 62.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 62.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 62.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 61.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 61.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 60.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 58.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 58.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 58.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 58.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 58.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 58.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 58.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 56.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 56.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 56.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 56.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 55.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 54.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 54.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 54.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 54.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 54.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 53.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 53.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 53.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 52.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 52.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 52.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 52.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 52.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 51.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 51.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 50.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 50.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 50.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 50.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 50.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 49.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 49.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 49.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 48.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 48.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 48.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 48.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 47.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 47.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 47.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 47.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 47.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 47.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 46.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 46.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 45.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 45.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 44.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 44.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 44.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 42.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 42.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 42.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 41.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 41.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 41.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 40.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 40.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 40.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 39.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 39.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 38.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 38.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 38.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 37.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 37.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 37.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 37.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 37.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 35.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 35.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 35.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 35.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 34.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 34.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 34.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 33.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 33.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 33.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 33.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 33.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 33.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 32.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 32.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 32.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 31.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 31.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 31.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 31.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 31.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 30.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 30.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 30.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 30.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 30.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 30.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 30.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 29.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 29.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 29.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 28.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 28.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 28.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 27.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 27.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 27.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 27.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 26.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 26.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 25.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 25.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 25.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 25.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 24.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 24.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 24.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 23.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 23.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 23.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 23.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 23.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 22.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 22.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 22.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 22.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 22.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 22.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 21.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 21.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 21.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 21.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 20.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 20.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 20.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 20.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 20.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 19.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 19.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 19.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 18.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 18.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 18.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 18.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 17.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 17.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 17.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 17.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 17.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 17.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 16.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 16.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 16.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 16.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 16.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 16.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 16.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 15.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 15.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 15.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 14.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 14.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 14.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 14.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 13.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 12.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 12.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 12.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 12.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 12.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 11.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 11.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 11.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 9.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 9.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 7.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

54.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 54.2
FF:10164-103B2 76 years, female 54.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.0
Pig sample Sample description nTPM
Caudate
nTPM: 188.0
Samples: 4

Max nTPM: 241.9
Min nTPM: 128.5
Sample A Female 128.5
Sample B Female 190.7
Sample C Male 241.9
Sample D Male 190.8

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