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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

75.884
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:70.2 nTPM
GTEx:37.2 nTPM
FANTOM5:75.2 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA015627
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA015979
Hippocampal formation mean intensity 75.884
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 16.530
Molecular layer of the dentate gyrus 15.131
Granular dentate gyrus 12.225
CA1 - oriens layer 15.886
CA1 - pyramidal layer 14.872
CA1 - radiatum layer 17.746
CA2 - oriens layer 20.292
CA2 - pyramidal layer 15.155
CA2 - radiatum layer 20.325
CA3 - oriens layer 26.134
CA3 - pyramidal layer 18.977
CA3 - radiatum layer 28.652
Stratum lucidum 16.507
Lacunosum moleculare 13.983
Subiculum 55.034

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.2
Sample id Sample description nTPM
Hippocampus
nTPM: 70.2
1898 Male, age 80, left hemisphere 101.9
2621 Female, age 67, right hemisphere 74.4
1855 Male, age 76, left hemisphere 70.7
2148 Female, age 91, left hemisphere 67.3
2529 Female, age 94, left hemisphere 56.8
1911 Female, age 85, right hemisphere 50.3

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 37.2
Samples: 197

Max nTPM: 138.4
Min nTPM: 2.7
Std nTPM: 21.8
Median nTPM: 34.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 138.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 104.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 94.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 94.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 93.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 87.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 86.5
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 85.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 84.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 82.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 81.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 80.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 76.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 73.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 70.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 68.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 68.5
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 67.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 66.8
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 66.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 64.0
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 62.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 61.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 61.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 61.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 59.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 58.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 58.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 56.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 55.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 55.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 55.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 55.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 54.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 54.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 53.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 53.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 52.2
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 51.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 51.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 51.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 51.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 50.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 50.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 50.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 50.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 50.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 49.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 49.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 47.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 47.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 47.2
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 47.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 47.1
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 46.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 45.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 45.7
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 45.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 45.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 45.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 44.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 44.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 44.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 44.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 44.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 44.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 43.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 43.7
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 43.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 42.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 42.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 41.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 41.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 40.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 40.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 40.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 40.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 39.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 39.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 39.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 39.2
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 38.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 38.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 37.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 37.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 37.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 37.5
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 37.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 37.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 36.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 36.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 36.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 36.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 35.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 35.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 34.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 34.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 34.7
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 34.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 34.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 34.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 33.1
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 33.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 32.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 32.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 32.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 32.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 31.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 31.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 31.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 31.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 31.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 31.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 30.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 30.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 30.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 29.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 29.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 29.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 29.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 29.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 29.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 28.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 28.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 28.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 28.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 28.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 28.2
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 27.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 27.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 26.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 26.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 26.2
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 26.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 26.1
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 26.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 25.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 24.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 24.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 24.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 23.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 23.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 23.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 23.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 22.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 22.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 22.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 22.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 22.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 22.0
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 21.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 21.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 21.2
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 21.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 20.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 19.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 18.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 18.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 18.6
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 18.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 17.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 16.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 16.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 15.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 14.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 14.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 14.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 13.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 13.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 13.4
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 13.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 13.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 12.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 12.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 12.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 11.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 11.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 10.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 10.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 10.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 9.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 9.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 8.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 8.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 8.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 8.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 7.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 7.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 7.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 7.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 7.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 7.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 6.8
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 5.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 5.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 4.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 2.7
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

75.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 75.2
FF:10153-102I9 76 years, female 99.6
FF:10169-103B7 60 years, female 50.8

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