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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:91.9 nTPM
GTEx:40.0 nTPM
FANTOM5:196.2 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040446
Glial cells Medium
Neuronal cells Medium



HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.9
Sample id Sample description nTPM
Hippocampus
nTPM: 91.9
2529 Female, age 94, left hemisphere 110.8
1898 Male, age 80, left hemisphere 94.0
1911 Female, age 85, right hemisphere 93.6
2621 Female, age 67, right hemisphere 92.4
2148 Female, age 91, left hemisphere 85.6
1855 Male, age 76, left hemisphere 75.1

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 40.0
Samples: 197

Max nTPM: 125.1
Min nTPM: 12.0
Std nTPM: 15.1
Median nTPM: 38.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 125.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 85.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 80.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 78.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 76.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 72.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 70.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 68.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 62.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 61.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 61.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 60.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 60.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 59.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 59.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 59.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 58.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 58.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 57.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 57.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 57.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 57.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 57.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 56.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 56.6
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 56.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 56.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 55.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 55.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 55.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 55.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 55.1
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 54.7
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 54.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 54.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 54.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 53.6
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 53.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 53.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 53.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 52.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 52.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 52.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 52.0
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 51.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 50.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 49.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 49.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 49.4
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 49.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 49.4
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 49.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 49.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 48.8
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 48.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 48.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 47.9
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 47.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 47.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 46.9
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 46.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 46.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 46.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 45.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 45.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 44.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 44.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 44.6
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 44.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 44.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 44.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 43.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 43.7
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 43.6
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 43.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 43.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 42.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 42.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 42.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 41.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 41.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 41.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 41.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 40.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 40.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 40.5
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 40.3
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 40.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 39.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 39.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 39.4
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 39.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 39.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 38.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 38.5
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 38.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 38.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 38.2
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 38.2
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 38.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 37.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 37.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 36.8
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 36.6
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 36.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 36.5
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 36.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 36.0
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 35.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 35.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 35.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 35.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 35.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 34.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 34.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 34.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 34.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 33.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 33.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 33.5
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 33.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 33.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 32.9
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 32.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 32.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 32.6
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 32.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 32.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 32.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 31.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 31.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 31.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 31.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 31.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 31.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 31.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 31.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 30.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 30.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 30.5
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 30.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 30.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 30.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 29.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 29.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 29.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 29.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 29.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 28.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 28.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 28.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 28.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 27.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 27.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 27.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 27.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 26.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 26.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 26.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 26.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 26.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 26.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 26.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 26.2
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 26.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 26.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 25.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 25.3
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 25.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 24.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 24.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 23.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 23.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 23.8
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 23.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 23.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 23.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 22.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 22.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 22.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 22.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 22.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 22.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 21.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 21.2
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 21.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 20.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 20.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 19.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 19.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 18.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 18.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 18.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 16.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 16.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 15.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 12.0
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

196.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 196.2
FF:10153-102I9 76 years, female 236.6
FF:10169-103B7 60 years, female 155.7

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