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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:201.4 nTPM
FANTOM5:512.8 Scaled Tags Per Million
Pig:60.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044840
Glial cells Low
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 201.4
Samples: 246

Max nTPM: 608.9
Min nTPM: 25.9
Std nTPM: 112.3
Median nTPM: 170.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 608.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 575.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 559.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 538.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 502.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 475.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 473.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 471.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 469.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 455.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 449.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 444.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 434.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 431.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 428.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 426.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 425.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 425.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 422.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 418.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 405.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 384.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 380.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 376.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 363.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 361.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 358.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 352.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 351.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 349.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 346.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 332.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 329.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 324.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 321.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 317.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 315.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 311.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 310.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 303.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 302.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 302.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 302.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 296.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 292.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 291.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 289.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 289.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 289.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 282.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 276.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 272.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 271.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 266.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 264.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 262.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 260.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 259.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 258.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 248.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 246.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 245.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 244.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 243.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 243.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 240.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 238.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 235.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 234.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 233.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 230.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 227.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 227.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 227.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 225.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 225.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 223.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 220.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 218.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 218.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 217.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 217.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 216.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 214.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 213.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 212.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 212.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 211.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 211.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 210.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 209.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 207.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 207.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 206.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 205.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 205.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 204.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 204.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 203.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 201.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 201.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 199.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 197.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 197.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 193.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 191.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 191.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 188.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 187.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 186.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 184.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 184.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 183.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 182.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 180.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 178.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 178.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 178.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 177.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 175.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 173.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 172.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 171.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 170.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 168.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 166.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 165.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 164.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 164.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 163.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 161.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 160.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 159.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 159.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 158.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 158.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 158.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 157.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 155.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 155.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 154.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 153.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 152.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 151.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 150.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 150.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 150.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 149.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 149.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 149.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 149.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 148.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 147.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 147.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 147.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 145.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 144.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 144.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 143.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 143.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 141.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 138.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 137.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 135.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 134.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 134.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 133.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 133.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 132.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 130.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 130.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 129.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 129.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 129.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 128.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 128.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 127.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 127.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 127.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 127.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 126.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 124.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 124.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 122.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 122.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 122.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 121.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 121.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 121.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 119.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 119.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 119.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 118.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 118.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 117.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 115.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 115.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 114.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 114.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 114.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 112.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 111.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 111.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 109.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 109.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 108.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 107.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 105.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 105.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 104.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 104.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 103.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 101.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 99.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 98.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 97.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 97.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 96.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 95.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 94.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 94.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 93.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 93.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 92.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 90.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 86.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 85.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 84.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 84.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 83.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 80.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 74.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 74.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 67.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 65.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 65.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 54.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 53.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 50.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 41.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 41.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 39.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 31.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 30.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 29.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 25.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

512.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 512.8
FF:10164-103B2 76 years, female 512.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.8
Pig sample Sample description nTPM
Caudate
nTPM: 60.8
Samples: 4

Max nTPM: 67.8
Min nTPM: 51.2
Sample A Female 51.2
Sample B Female 65.1
Sample C Male 67.8
Sample D Male 59.1

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