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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
65.5
nTPM
GTEx:
44.7
nTPM
FANTOM5:
47.9
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA000271
Antibody CAB022159
Glial cells
Not detected
High
Neuronal cells
Not detected
Medium
HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
65.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 65.5
2529
Female, age 94, left hemisphere
74.5
2621
Female, age 67, right hemisphere
71.1
1855
Male, age 76, left hemisphere
69.3
1911
Female, age 85, right hemisphere
62.9
1898
Male, age 80, left hemisphere
59.5
2148
Female, age 91, left hemisphere
56.0
HIPPOCAMPUS - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
44.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 44.7
Samples: 197
Max nTPM: 161.6
Min nTPM: 12.8
Std nTPM: 24.2
Median nTPM: 38.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
161.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
130.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
119.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
107.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
106.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
103.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
100.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
99.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
98.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
97.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
96.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
95.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
93.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
92.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
89.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
87.7
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
86.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
80.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
79.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
78.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
77.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
77.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
72.2
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
72.0
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
71.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
71.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
70.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
68.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
67.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
67.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
66.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
66.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
64.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
63.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
63.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
62.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
62.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
61.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
61.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
61.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
61.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
59.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
58.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
55.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
54.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
54.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
54.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
54.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
54.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
53.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
52.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
52.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
52.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
52.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
52.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
50.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
49.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
49.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
49.2
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
48.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
48.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
48.6
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
48.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
48.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
47.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
46.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
46.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
46.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
46.4
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
46.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
46.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
46.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
46.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
45.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
45.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
44.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
44.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
44.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
43.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
43.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
43.1
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
42.9
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
42.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
42.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
42.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
42.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
42.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
42.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
42.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
42.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
41.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
40.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
40.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
39.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
39.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
39.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
38.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
38.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
38.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
38.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
38.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
37.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
37.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
37.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
37.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
37.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
36.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
36.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
36.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
36.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
35.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
35.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
35.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
35.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
34.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
34.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
33.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
33.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
33.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
33.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
33.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
33.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
32.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
32.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
32.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
32.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
32.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
31.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
31.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
31.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
31.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
31.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
31.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
31.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
31.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
30.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
30.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
30.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
30.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
29.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
29.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
29.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
29.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
28.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
28.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
28.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
28.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
28.0
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
27.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
27.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
27.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
27.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
27.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
27.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
27.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
26.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
26.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
26.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
25.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
25.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
25.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
25.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
24.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
23.9
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
23.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
23.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
23.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
23.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
22.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
22.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
22.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
22.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
22.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
22.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
22.0
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
20.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
20.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
20.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
20.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
20.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
20.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
19.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
19.2
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
19.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
19.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
18.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
18.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
17.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
17.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
17.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
15.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
15.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
15.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
15.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
14.7
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
12.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
12.8
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HIPPOCAMPUS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
