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GABARAPL2
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  • GABARAPL2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:316.1 nTPM
FANTOM5:167.4 Scaled Tags Per Million
Pig:164.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA036726
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

316.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 316.1
Samples: 246

Max nTPM: 693.7
Min nTPM: 195.4
Std nTPM: 81.0
Median nTPM: 301.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 693.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 689.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 668.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 613.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 553.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 550.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 542.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 536.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 496.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 490.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 485.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 484.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 481.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 462.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 459.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 453.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 438.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 436.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 432.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 425.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 424.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 423.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 420.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 415.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 409.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 406.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 403.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 401.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 399.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 398.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 391.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 386.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 383.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 381.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 380.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 378.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 376.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 376.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 372.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 372.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 372.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 371.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 367.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 367.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 365.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 363.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 362.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 359.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 356.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 356.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 355.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 354.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 354.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 352.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 352.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 351.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 350.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 350.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 348.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 348.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 348.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 348.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 347.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 344.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 344.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 344.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 344.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 343.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 343.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 343.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 343.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 342.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 341.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 338.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 337.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 336.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 334.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 332.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 331.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 327.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 326.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 326.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 325.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 323.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 322.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 322.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 321.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 320.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 319.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 319.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 318.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 318.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 317.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 316.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 316.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 316.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 316.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 315.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 315.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 315.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 315.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 312.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 312.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 312.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 312.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 312.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 311.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 311.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 310.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 309.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 308.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 307.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 307.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 305.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 305.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 305.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 305.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 305.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 304.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 304.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 303.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 302.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 301.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 301.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 301.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 299.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 297.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 297.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 295.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 295.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 295.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 295.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 292.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 292.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 292.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 290.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 290.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 290.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 289.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 289.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 289.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 289.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 289.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 289.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 288.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 287.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 285.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 285.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 284.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 284.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 283.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 282.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 281.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 280.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 279.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 279.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 279.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 278.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 278.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 278.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 278.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 276.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 276.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 275.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 275.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 274.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 274.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 273.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 273.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 272.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 272.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 272.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 271.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 270.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 269.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 268.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 268.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 267.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 267.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 267.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 266.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 266.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 263.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 262.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 262.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 260.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 259.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 259.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 258.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 257.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 257.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 257.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 257.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 255.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 254.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 254.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 254.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 253.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 253.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 251.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 251.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 250.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 248.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 248.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 247.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 246.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 246.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 245.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 245.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 245.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 245.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 243.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 243.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 242.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 242.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 241.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 241.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 239.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 238.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 238.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 238.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 238.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 237.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 236.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 236.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 234.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 233.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 232.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 232.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 232.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 229.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 226.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 225.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 224.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 223.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 222.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 222.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 221.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 216.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 213.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 213.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 212.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 207.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 203.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 202.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 195.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

167.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 167.4
FF:10164-103B2 76 years, female 167.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.2
Pig sample Sample description nTPM
Caudate
nTPM: 164.2
Samples: 4

Max nTPM: 180.1
Min nTPM: 155.7
Sample A Female 159.2
Sample B Female 155.7
Sample C Male 180.1
Sample D Male 161.6

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