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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:35.1 nTPM
FANTOM5:27.8 Scaled Tags Per Million
Pig:23.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA055409Antibody HPA056010
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.1
Samples: 246

Max nTPM: 74.2
Min nTPM: 4.4
Std nTPM: 10.2
Median nTPM: 33.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 74.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 67.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 64.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 61.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 61.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 59.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 59.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 58.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 57.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 57.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 55.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 55.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 54.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 54.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 53.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 52.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 52.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 52.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 50.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 50.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 50.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 50.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 49.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 49.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 49.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 49.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 48.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 48.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 48.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 47.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 47.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 47.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 46.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 46.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 46.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 46.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 45.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 45.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 44.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 44.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 44.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 44.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 44.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 44.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 43.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 42.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 42.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 42.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 42.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 42.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 42.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 41.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 41.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 41.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 41.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 41.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 41.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 40.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 40.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 40.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 40.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 40.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 40.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 40.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 39.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 39.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 39.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 39.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 39.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 39.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 39.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 39.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 39.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 39.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 38.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 38.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 38.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 38.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 38.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 38.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 38.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 38.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 38.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 37.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 37.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 37.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 37.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 37.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 36.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 36.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 36.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 36.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 36.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 36.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 36.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 36.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 35.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 35.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 35.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 35.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 35.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 35.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 35.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 35.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 35.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 35.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 35.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 35.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 35.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 35.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 34.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 34.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 34.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 34.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 34.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 34.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 34.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 34.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 34.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 34.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 33.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 33.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 33.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 33.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 33.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 33.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 33.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 33.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 33.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 33.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 32.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 32.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 32.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 32.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 32.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 32.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 32.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 32.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 32.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 31.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 31.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 31.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 31.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 31.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 31.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 31.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 31.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 31.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 31.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 31.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 31.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 31.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 31.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 31.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 30.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 30.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 30.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 30.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 30.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 30.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 30.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 30.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 30.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 30.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 30.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 29.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 29.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 29.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 29.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 29.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 29.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 29.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 29.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 29.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 29.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 29.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 29.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 29.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 28.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 28.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 28.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 27.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 27.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 27.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 27.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 27.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 27.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 27.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 27.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 27.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 27.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 27.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 26.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 26.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 26.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 26.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 26.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 26.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 26.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 26.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 26.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 26.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 26.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 26.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 26.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 26.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 26.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 25.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 25.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 25.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 25.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 25.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 25.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 25.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 25.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 25.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 25.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 25.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 25.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 24.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 24.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 24.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 24.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 23.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 23.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 22.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 22.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 22.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 22.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 21.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 21.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 21.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 21.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 21.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 20.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 20.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 20.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 20.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 19.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 19.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 19.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 17.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 17.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 16.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 16.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 4.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.8
FF:10164-103B2 76 years, female 27.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.9
Pig sample Sample description nTPM
Caudate
nTPM: 23.9
Samples: 4

Max nTPM: 27.1
Min nTPM: 20.0
Sample A Female 20.0
Sample B Female 25.0
Sample C Male 27.1
Sample D Male 23.4

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