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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:193.2 nTPM
FANTOM5:1190.1 Scaled Tags Per Million
Pig:99.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA011868Antibody CAB024949
Glial cells MediumLow
Neuronal cells HighMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

193.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 193.2
Samples: 246

Max nTPM: 834.7
Min nTPM: 23.8
Std nTPM: 126.1
Median nTPM: 153.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 834.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 678.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 581.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 542.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 534.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 522.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 518.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 516.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 515.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 508.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 508.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 504.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 487.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 476.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 475.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 447.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 434.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 428.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 426.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 390.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 380.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 372.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 369.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 357.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 355.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 355.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 346.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 343.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 328.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 327.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 327.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 317.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 313.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 310.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 308.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 305.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 303.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 301.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 297.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 296.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 295.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 293.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 291.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 291.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 290.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 290.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 285.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 280.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 278.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 273.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 272.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 271.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 271.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 266.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 263.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 253.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 250.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 247.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 245.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 242.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 241.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 240.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 240.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 238.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 237.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 233.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 226.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 224.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 221.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 221.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 220.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 220.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 218.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 218.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 211.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 209.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 208.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 208.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 207.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 206.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 205.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 205.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 204.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 203.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 202.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 198.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 197.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 197.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 190.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 190.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 189.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 188.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 187.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 187.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 186.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 185.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 184.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 184.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 180.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 179.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 179.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 179.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 179.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 178.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 175.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 173.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 172.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 172.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 168.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 168.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 167.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 165.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 164.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 163.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 163.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 162.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 160.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 157.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 155.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 155.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 154.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 153.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 153.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 153.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 153.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 153.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 152.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 152.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 152.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 151.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 151.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 150.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 150.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 149.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 149.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 149.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 148.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 146.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 145.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 145.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 144.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 144.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 143.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 143.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 140.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 138.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 137.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 137.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 137.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 136.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 136.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 136.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 136.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 136.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 135.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 135.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 134.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 132.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 131.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 130.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 129.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 128.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 127.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 127.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 127.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 126.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 126.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 120.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 120.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 119.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 119.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 118.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 117.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 116.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 114.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 112.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 112.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 111.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 110.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 109.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 109.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 107.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 107.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 107.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 105.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 105.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 104.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 103.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 103.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 103.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 103.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 102.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 101.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 99.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 98.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 98.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 97.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 96.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 96.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 95.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 94.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 93.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 92.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 92.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 92.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 90.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 87.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 87.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 87.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 85.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 84.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 83.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 83.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 82.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 80.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 80.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 78.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 75.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 75.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 74.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 74.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 74.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 72.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 70.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 70.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 68.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 68.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 66.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 66.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 66.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 65.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 64.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 63.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 62.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 60.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 58.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 57.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 57.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 54.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 51.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 49.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 49.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 47.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 42.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 28.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 23.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1190.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1190.1
FF:10164-103B2 76 years, female 1190.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.3
Pig sample Sample description nTPM
Caudate
nTPM: 99.3
Samples: 4

Max nTPM: 112.2
Min nTPM: 84.6
Sample A Female 99.1
Sample B Female 101.2
Sample C Male 112.2
Sample D Male 84.6

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