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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
39.9
nTPM
GTEx:
14.2
nTPM
FANTOM5:
23.3
Scaled Tags Per Million
HIPPOCAMPUS - Annotated protein expression
Pending normal tissue analysis
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA038946
Antibody HPA038947
Glial cells
High
Low
Neuronal cells
Medium
Medium
HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 39.9
2621
Female, age 67, right hemisphere
43.9
2148
Female, age 91, left hemisphere
40.6
1911
Female, age 85, right hemisphere
40.1
2529
Female, age 94, left hemisphere
39.1
1898
Male, age 80, left hemisphere
38.8
1855
Male, age 76, left hemisphere
36.8
HIPPOCAMPUS - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.2
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 14.2
Samples: 197
Max nTPM: 45.1
Min nTPM: 4.5
Std nTPM: 7.2
Median nTPM: 12.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
45.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
44.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
39.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
38.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
37.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
36.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
32.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
30.9
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
29.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
28.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
27.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
27.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
25.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
25.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
25.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
24.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
24.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
24.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
23.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
23.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
23.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
23.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
22.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
21.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
21.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
21.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
21.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
20.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
20.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
19.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
19.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
19.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
19.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
19.3
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
19.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
18.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
18.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
18.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
18.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
18.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
18.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
18.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
17.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
17.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
17.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
17.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
17.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
16.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
16.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
16.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
16.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
16.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
16.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
16.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
15.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
15.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
15.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
15.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
15.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
15.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
15.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
15.3
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
15.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
15.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
15.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
15.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
15.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
15.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
14.7
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
14.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
14.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
14.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
14.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
14.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
14.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
14.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
14.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
14.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
14.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
14.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
13.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
13.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
13.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
13.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
13.5
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
13.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
13.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
13.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
13.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
13.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
13.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
12.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
12.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
12.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
12.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
12.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
12.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
12.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
12.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
12.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
12.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
12.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
12.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
12.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
12.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
12.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
11.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
11.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
11.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
11.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
11.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
11.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
11.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
11.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
11.5
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
11.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
11.3
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
11.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
11.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
11.2
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
11.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
11.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
11.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
11.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
11.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
11.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
10.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
10.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
10.7
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
10.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
10.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
10.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
10.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
10.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
10.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
10.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
9.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
9.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
9.9
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
9.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
9.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
9.8
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
9.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
9.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
9.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
9.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
9.2
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
9.1
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
9.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
9.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
8.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
8.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
8.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
8.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
8.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
8.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
8.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
8.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
8.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
8.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
8.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
8.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
8.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
8.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
8.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
8.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
7.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
7.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
7.8
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
7.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
7.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
7.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
7.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
7.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
7.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
7.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
7.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
7.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
7.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
7.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
6.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
6.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
6.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
6.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
6.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
6.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
6.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
5.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
5.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
5.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
5.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
5.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
5.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
5.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
4.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
4.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
4.5
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HIPPOCAMPUS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
