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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:333.9 nTPM
FANTOM5:443.8 Scaled Tags Per Million
Pig:169.6 nTPM

CAUDATE - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA059237
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

333.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 333.9
Samples: 246

Max nTPM: 868.5
Min nTPM: 25.8
Std nTPM: 153.6
Median nTPM: 316.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 868.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 835.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 758.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 705.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 691.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 669.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 657.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 653.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 641.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 639.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 609.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 594.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 590.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 590.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 583.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 576.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 566.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 563.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 554.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 542.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 536.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 532.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 532.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 526.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 525.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 519.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 514.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 514.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 510.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 506.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 506.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 503.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 502.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 502.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 501.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 500.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 498.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 495.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 495.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 495.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 495.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 492.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 486.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 480.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 478.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 478.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 475.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 475.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 473.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 472.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 467.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 466.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 466.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 466.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 464.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 460.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 458.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 455.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 453.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 452.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 448.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 440.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 436.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 436.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 430.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 428.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 428.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 427.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 425.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 424.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 424.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 422.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 419.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 418.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 418.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 411.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 410.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 410.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 409.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 409.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 409.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 397.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 397.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 396.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 394.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 386.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 386.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 383.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 380.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 379.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 377.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 377.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 375.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 372.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 371.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 370.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 365.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 364.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 363.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 362.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 359.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 357.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 354.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 352.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 346.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 346.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 344.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 344.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 342.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 341.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 336.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 336.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 335.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 332.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 332.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 331.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 326.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 325.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 325.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 321.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 321.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 321.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 319.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 313.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 312.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 311.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 311.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 307.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 306.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 306.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 300.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 300.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 300.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 299.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 298.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 297.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 296.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 295.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 295.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 293.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 293.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 287.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 285.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 285.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 283.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 282.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 279.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 279.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 276.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 274.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 273.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 270.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 269.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 262.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 262.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 262.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 259.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 257.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 255.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 254.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 253.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 253.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 253.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 252.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 252.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 252.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 249.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 246.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 241.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 240.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 239.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 239.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 238.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 237.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 236.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 233.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 232.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 231.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 230.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 230.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 229.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 224.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 224.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 223.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 217.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 215.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 209.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 208.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 206.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 205.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 204.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 203.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 199.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 197.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 197.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 196.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 195.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 195.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 190.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 188.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 185.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 183.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 180.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 179.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 177.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 175.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 174.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 172.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 170.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 164.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 162.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 162.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 162.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 160.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 160.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 156.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 155.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 154.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 153.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 153.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 152.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 150.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 150.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 149.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 142.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 138.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 133.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 130.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 127.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 126.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 124.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 121.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 119.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 118.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 116.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 115.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 113.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 98.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 95.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 89.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 76.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 68.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 54.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 52.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 43.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 25.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

443.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 443.8
FF:10164-103B2 76 years, female 443.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.6
Pig sample Sample description nTPM
Caudate
nTPM: 169.6
Samples: 4

Max nTPM: 204.3
Min nTPM: 129.3
Sample A Female 129.3
Sample B Female 185.6
Sample C Male 204.3
Sample D Male 159.1

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