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SEZ6
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  • SEZ6
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:73.0 nTPM
FANTOM5:267.1 Scaled Tags Per Million
Pig:70.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA011777
Glial cells High
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 73.0
Samples: 246

Max nTPM: 163.2
Min nTPM: 4.4
Std nTPM: 37.1
Median nTPM: 73.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 163.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 149.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 146.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 142.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 142.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 141.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 141.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 140.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 140.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 139.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 137.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 136.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 135.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 135.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 135.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 134.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 133.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 130.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 128.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 127.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 126.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 126.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 125.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 125.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 124.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 122.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 122.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 122.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 121.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 119.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 117.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 116.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 115.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 115.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 113.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 112.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 112.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 111.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 111.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 111.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 111.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 110.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 110.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 110.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 108.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 108.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 107.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 106.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 105.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 105.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 105.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 105.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 104.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 103.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 103.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 103.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 102.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 102.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 102.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 101.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 101.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 101.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 100.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 100.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 99.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 98.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 97.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 97.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 97.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 96.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 96.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 96.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 96.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 96.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 96.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 96.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 95.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 95.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 94.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 94.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 94.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 94.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 94.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 93.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 93.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 92.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 91.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 91.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 90.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 90.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 89.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 88.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 88.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 88.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 87.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 87.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 87.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 86.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 86.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 86.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 85.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 83.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 83.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 82.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 82.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 81.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 81.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 79.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 78.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 78.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 77.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 77.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 77.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 77.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 76.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 76.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 76.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 75.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 74.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 74.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 74.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 74.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 73.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 73.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 73.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 72.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 72.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 71.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 71.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 71.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 70.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 70.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 69.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 69.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 68.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 68.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 68.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 67.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 67.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 67.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 66.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 66.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 66.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 64.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 63.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 62.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 62.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 61.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 61.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 60.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 60.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 59.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 59.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 58.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 57.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 57.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 57.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 57.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 55.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 55.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 55.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 54.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 52.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 52.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 52.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 51.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 51.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 50.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 50.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 50.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 48.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 48.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 48.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 47.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 47.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 46.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 45.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 45.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 44.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 44.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 44.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 43.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 42.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 42.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 41.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 41.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 40.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 40.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 39.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 38.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 38.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 38.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 37.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 36.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 35.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 35.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 34.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 34.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 33.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 33.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 33.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 32.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 31.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 31.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 31.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 31.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 30.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 30.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 29.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 27.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 27.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 26.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 25.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 24.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 24.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 23.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 23.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 22.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 22.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 22.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 22.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 22.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 22.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 21.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 21.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 21.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 20.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 20.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 20.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 19.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 19.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 18.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 17.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 17.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 16.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 15.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 13.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 11.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 11.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 9.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 9.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 8.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 7.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 5.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 5.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 4.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

267.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 267.1
FF:10164-103B2 76 years, female 267.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.7
Pig sample Sample description nTPM
Caudate
nTPM: 70.7
Samples: 4

Max nTPM: 90.5
Min nTPM: 43.5
Sample A Female 43.5
Sample B Female 68.0
Sample C Male 90.5
Sample D Male 80.8

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