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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:44.6 nTPM
FANTOM5:51.3 Scaled Tags Per Million
Pig:13.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047815
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.6
Samples: 246

Max nTPM: 98.5
Min nTPM: 21.8
Std nTPM: 14.2
Median nTPM: 42.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 98.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 96.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 88.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 87.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 83.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 82.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 81.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 80.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 79.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 76.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 76.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 75.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 74.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 71.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 70.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 69.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 69.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 68.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 68.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 68.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 66.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 65.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 63.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 62.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 62.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 62.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 62.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 62.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 62.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 61.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 61.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 60.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 60.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 60.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 59.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 58.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 58.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 58.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 57.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 57.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 57.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 56.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 56.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 55.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 55.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 55.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 54.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 54.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 54.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 54.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 53.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 53.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 53.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 53.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 53.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 53.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 53.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 53.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 52.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 51.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 51.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 51.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 51.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 51.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 51.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 50.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 50.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 50.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 50.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 50.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 50.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 50.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 49.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 49.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 49.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 48.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 48.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 48.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 48.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 48.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 48.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 48.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 48.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 48.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 48.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 47.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 47.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 47.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 47.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 47.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 46.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 46.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 46.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 46.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 45.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 45.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 45.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 45.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 45.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 45.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 45.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 45.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 45.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 45.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 45.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 44.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 44.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 44.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 44.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 44.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 43.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 43.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 43.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 42.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 42.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 42.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 42.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 42.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 42.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 42.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 42.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 42.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 42.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 42.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 41.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 41.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 41.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 41.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 41.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 40.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 40.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 40.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 40.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 40.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 40.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 39.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 39.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 39.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 39.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 39.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 39.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 39.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 38.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 38.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 38.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 38.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 38.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 38.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 38.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 38.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 37.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 37.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 37.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 37.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 37.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 37.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 37.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 37.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 37.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 37.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 36.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 36.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 36.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 36.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 36.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 36.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 36.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 36.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 36.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 36.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 36.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 35.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 35.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 35.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 35.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 35.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 35.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 35.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 34.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 34.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 34.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 34.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 34.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 34.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 34.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 34.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 34.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 34.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 33.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 33.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 33.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 33.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 33.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 33.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 33.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 33.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 33.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 32.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 32.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 32.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 32.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 32.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 32.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 31.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 31.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 31.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 31.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 31.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 31.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 31.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 31.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 30.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 30.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 30.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 30.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 29.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 29.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 29.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 29.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 29.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 29.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 29.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 29.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 28.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 28.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 28.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 28.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 28.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 28.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 28.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 28.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 28.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 28.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 27.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 27.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 27.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 26.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 26.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 26.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 25.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 25.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 25.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 24.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 24.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 22.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 21.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

51.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 51.3
FF:10164-103B2 76 years, female 51.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.7
Pig sample Sample description nTPM
Caudate
nTPM: 13.7
Samples: 4

Max nTPM: 14.2
Min nTPM: 13.3
Sample A Female 13.8
Sample B Female 13.5
Sample C Male 14.2
Sample D Male 13.3

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