We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PFN2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • PFN2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:189.7 nTPM
FANTOM5:196.6 Scaled Tags Per Million
Pig:352.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA035611Antibody CAB037073
Glial cells LowHigh
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

189.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 189.7
Samples: 246

Max nTPM: 421.1
Min nTPM: 97.1
Std nTPM: 52.4
Median nTPM: 183.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 421.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 417.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 403.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 376.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 351.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 324.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 319.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 308.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 299.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 294.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 288.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 283.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 279.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 274.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 273.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 270.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 268.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 266.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 264.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 259.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 256.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 253.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 251.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 251.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 250.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 249.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 246.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 246.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 244.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 244.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 242.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 241.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 240.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 239.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 239.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 237.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 235.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 234.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 233.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 233.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 231.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 229.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 228.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 228.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 226.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 224.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 224.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 223.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 222.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 222.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 222.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 219.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 219.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 217.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 217.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 216.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 215.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 215.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 214.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 213.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 213.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 212.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 211.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 211.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 210.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 210.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 209.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 209.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 208.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 208.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 208.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 208.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 207.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 207.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 207.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 206.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 206.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 206.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 206.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 205.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 204.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 204.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 203.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 203.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 203.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 203.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 202.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 202.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 201.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 201.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 201.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 197.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 196.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 195.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 195.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 194.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 194.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 193.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 193.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 193.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 193.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 193.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 193.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 193.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 191.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 191.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 191.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 191.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 190.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 190.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 189.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 188.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 187.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 187.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 187.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 187.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 186.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 186.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 186.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 186.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 185.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 184.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 183.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 183.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 182.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 182.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 182.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 182.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 182.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 182.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 181.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 181.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 180.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 179.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 177.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 177.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 176.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 176.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 175.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 175.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 174.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 174.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 173.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 172.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 172.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 172.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 171.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 171.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 171.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 171.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 171.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 170.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 169.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 168.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 168.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 167.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 167.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 166.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 166.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 166.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 166.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 165.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 165.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 164.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 164.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 163.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 163.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 161.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 161.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 158.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 157.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 157.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 157.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 157.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 156.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 156.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 156.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 154.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 154.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 154.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 153.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 153.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 153.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 152.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 152.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 151.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 151.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 150.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 149.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 149.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 148.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 147.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 147.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 146.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 146.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 144.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 144.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 144.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 143.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 143.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 143.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 142.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 142.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 141.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 141.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 141.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 141.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 140.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 139.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 138.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 138.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 138.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 137.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 136.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 136.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 136.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 136.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 135.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 133.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 133.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 132.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 132.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 132.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 131.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 131.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 131.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 131.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 129.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 128.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 128.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 128.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 127.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 126.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 125.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 123.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 123.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 123.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 119.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 119.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 118.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 116.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 111.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 106.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 105.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 102.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 97.1
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

196.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 196.6
FF:10164-103B2 76 years, female 196.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

352.1
Pig sample Sample description nTPM
Caudate
nTPM: 352.2
Samples: 4

Max nTPM: 409.2
Min nTPM: 331.9
Sample A Female 333.9
Sample B Female 331.9
Sample C Male 409.2
Sample D Male 333.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org