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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:91.0 nTPM
FANTOM5:266.0 Scaled Tags Per Million
Pig:321.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051783Antibody HPA051785Antibody HPA053973Antibody CAB004330
Glial cells Not detectedNot detectedNot detectedMedium
Neuronal cells HighMediumMediumHigh








CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 91.0
Samples: 246

Max nTPM: 597.7
Min nTPM: 6.0
Std nTPM: 56.0
Median nTPM: 87.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 597.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 307.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 204.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 198.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 179.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 179.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 175.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 175.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 174.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 174.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 173.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 172.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 171.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 167.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 164.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 164.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 163.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 160.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 157.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 157.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 156.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 153.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 151.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 150.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 143.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 143.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 142.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 141.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 137.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 136.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 135.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 135.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 134.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 134.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 133.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 133.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 133.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 133.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 133.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 132.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 132.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 131.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 130.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 130.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 129.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 128.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 126.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 126.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 125.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 125.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 125.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 124.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 124.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 123.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 123.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 122.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 122.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 122.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 122.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 122.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 121.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 121.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 121.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 119.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 119.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 119.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 119.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 119.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 118.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 118.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 115.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 115.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 115.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 115.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 113.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 113.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 112.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 112.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 112.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 111.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 110.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 109.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 109.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 108.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 108.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 107.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 106.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 104.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 104.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 104.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 103.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 103.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 102.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 101.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 101.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 101.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 101.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 101.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 100.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 100.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 99.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 99.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 99.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 99.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 98.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 98.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 97.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 97.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 97.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 97.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 97.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 95.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 95.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 94.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 92.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 92.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 91.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 91.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 90.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 89.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 88.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 88.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 88.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 87.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 87.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 86.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 86.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 86.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 85.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 85.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 85.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 84.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 84.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 83.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 83.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 83.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 82.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 80.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 79.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 79.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 79.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 79.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 79.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 78.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 78.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 78.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 77.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 76.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 76.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 76.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 75.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 75.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 74.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 74.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 74.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 73.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 73.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 73.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 72.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 72.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 71.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 71.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 70.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 70.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 70.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 69.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 68.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 68.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 65.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 65.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 64.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 64.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 64.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 63.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 63.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 63.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 62.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 62.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 58.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 56.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 55.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 55.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 54.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 54.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 54.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 53.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 51.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 50.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 50.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 49.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 48.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 48.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 46.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 45.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 44.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 43.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 43.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 42.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 42.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 42.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 41.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 41.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 40.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 40.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 40.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 39.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 38.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 38.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 37.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 36.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 36.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 35.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 35.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 34.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 34.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 33.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 33.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 33.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 31.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 30.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 29.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 27.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 27.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 27.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 26.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 23.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 23.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 23.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 22.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 22.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 19.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 19.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 17.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 17.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 17.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 16.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 16.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 13.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 13.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 11.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 9.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 8.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 8.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 8.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 7.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 6.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

266.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 266.0
FF:10164-103B2 76 years, female 266.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

321.1
Pig sample Sample description nTPM
Caudate
nTPM: 321.1
Samples: 4

Max nTPM: 363.5
Min nTPM: 281.0
Sample A Female 284.6
Sample B Female 355.3
Sample C Male 363.5
Sample D Male 281.0

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