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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

105.944
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:112.7 nTPM
GTEx:31.5 nTPM
FANTOM5:199.5 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA011166Antibody HPA012945Antibody CAB005605
Glial cells Not detectedNot detectedMedium
Neuronal cells HighHighMedium







HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA011166
Hippocampal formation mean intensity 105.944
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 67.210
Molecular layer of the dentate gyrus 77.398
Granular dentate gyrus 48.162
CA1 - oriens layer 105.944
CA1 - pyramidal layer 80.332
CA1 - radiatum layer 101.993
CA2 - oriens layer 105.656
CA2 - pyramidal layer 68.504
CA2 - radiatum layer 99.514
CA3 - oriens layer 103.637
CA3 - pyramidal layer 62.782
CA3 - radiatum layer 100.232
Stratum lucidum 64.031
Lacunosum moleculare 87.961
Subiculum 98.851

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.7
Sample id Sample description nTPM
Hippocampus
nTPM: 112.7
1898 Male, age 80, left hemisphere 165.7
2621 Female, age 67, right hemisphere 116.8
1911 Female, age 85, right hemisphere 113.4
1855 Male, age 76, left hemisphere 113.3
2148 Female, age 91, left hemisphere 95.2
2529 Female, age 94, left hemisphere 72.1

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.5
Samples: 197

Max nTPM: 122.2
Min nTPM: 5.4
Std nTPM: 18.8
Median nTPM: 28.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 122.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 94.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 94.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 86.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 85.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 77.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 70.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 65.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 63.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 62.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 61.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 61.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 60.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 60.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 60.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 58.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 57.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 57.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 57.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 56.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 55.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 55.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 54.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 52.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 51.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 51.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 50.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 50.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 50.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 49.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 49.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 48.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 48.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 48.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 46.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 45.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 45.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 45.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 44.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 43.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 43.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 42.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 42.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 42.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 42.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 42.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 42.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 42.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 42.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 42.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 41.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 41.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 40.5
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 40.4
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 40.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 40.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 40.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 39.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 39.7
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 39.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 38.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 38.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 38.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 38.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 38.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 38.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 37.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 37.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 36.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 35.9
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 35.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 35.3
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 35.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 35.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 34.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 34.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 34.2
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 34.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 33.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 33.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 33.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 33.4
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 32.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 32.7
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 32.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 32.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 32.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 31.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 31.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 31.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 30.8
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 30.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 30.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 30.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 30.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 30.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 29.7
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 29.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 28.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 28.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 27.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 27.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 27.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 27.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 27.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 26.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 25.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 25.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 25.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 24.8
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 24.7
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 24.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 24.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 24.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 24.4
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 24.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 24.3
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 24.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 23.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 23.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 23.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 22.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 21.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 21.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 21.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 21.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 21.0
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 20.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 19.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 19.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 19.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 19.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 19.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 19.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 19.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 19.6
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 19.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 19.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 18.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 18.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 18.3
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 18.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 18.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 17.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 17.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 17.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 16.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 16.4
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 16.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 15.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 15.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 15.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 15.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 15.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 15.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 15.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 15.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 14.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 14.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 14.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 14.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 13.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 13.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 13.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 13.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 13.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 13.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 12.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 12.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 12.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 12.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 12.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 12.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 11.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 11.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 11.5
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 11.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 11.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 11.3
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 11.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 10.6
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 10.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 9.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 9.4
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 9.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 9.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 8.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 8.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 8.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 7.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 7.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 7.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 7.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 7.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 7.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 6.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 5.4
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

199.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 199.5
FF:10169-103B7 60 years, female 266.9
FF:10153-102I9 76 years, female 132.2

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