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RAB7A
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  • RAB7A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:153.5 nTPM
FANTOM5:311.5 Scaled Tags Per Million
Pig:215.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006964Antibody CAB037131
Glial cells HighLow
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 153.5
Samples: 246

Max nTPM: 258.8
Min nTPM: 117.4
Std nTPM: 18.3
Median nTPM: 149.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 258.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 236.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 227.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 226.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 219.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 206.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 205.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 202.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 188.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 187.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 186.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 185.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 182.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 181.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 179.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 178.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 178.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 177.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 175.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 174.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 173.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 173.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 172.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 172.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 171.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 170.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 170.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 170.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 170.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 169.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 168.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 168.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 168.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 167.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 167.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 166.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 166.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 166.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 166.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 166.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 165.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 165.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 165.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 165.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 165.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 165.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 165.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 164.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 163.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 163.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 162.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 162.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 162.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 162.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 161.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 161.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 161.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 161.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 161.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 161.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 161.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 160.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 160.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 160.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 159.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 159.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 159.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 158.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 158.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 158.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 158.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 158.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 158.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 158.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 158.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 158.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 157.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 157.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 157.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 157.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 157.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 156.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 156.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 156.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 156.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 156.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 156.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 155.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 155.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 155.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 155.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 155.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 154.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 154.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 154.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 153.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 153.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 153.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 153.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 153.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 153.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 152.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 152.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 152.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 151.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 151.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 151.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 151.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 151.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 151.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 151.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 151.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 151.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 151.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 151.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 151.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 151.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 151.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 150.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 150.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 150.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 150.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 150.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 149.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 149.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 149.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 149.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 149.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 149.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 149.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 149.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 149.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 149.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 149.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 149.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 149.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 148.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 148.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 148.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 148.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 148.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 148.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 148.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 148.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 148.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 148.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 148.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 148.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 148.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 147.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 147.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 147.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 147.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 147.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 147.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 147.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 146.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 146.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 146.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 146.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 146.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 146.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 146.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 146.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 146.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 146.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 145.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 145.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 145.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 145.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 145.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 145.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 144.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 144.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 144.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 144.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 144.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 144.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 143.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 143.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 143.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 142.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 142.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 142.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 142.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 142.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 142.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 142.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 142.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 141.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 141.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 141.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 141.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 141.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 141.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 140.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 140.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 140.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 140.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 139.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 139.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 139.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 139.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 138.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 138.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 138.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 137.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 137.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 137.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 137.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 136.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 136.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 136.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 136.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 136.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 136.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 136.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 136.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 135.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 135.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 135.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 134.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 134.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 134.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 134.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 133.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 133.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 133.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 133.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 132.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 132.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 132.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 132.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 131.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 131.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 131.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 130.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 130.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 130.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 128.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 128.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 126.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 125.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 124.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 123.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 117.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

311.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 311.5
FF:10164-103B2 76 years, female 311.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

215.4
Pig sample Sample description nTPM
Caudate
nTPM: 215.4
Samples: 4

Max nTPM: 252.7
Min nTPM: 189.2
Sample A Female 199.6
Sample B Female 220.2
Sample C Male 252.7
Sample D Male 189.2

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