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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:33.5 nTPM
FANTOM5:123.8 Scaled Tags Per Million
Pig:110.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA023738Antibody HPA023742
Glial cells MediumMedium
Neuronal cells HighHigh



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.5
Samples: 246

Max nTPM: 82.0
Min nTPM: 20.4
Std nTPM: 8.0
Median nTPM: 32.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 82.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 74.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 63.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 53.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 52.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 52.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 51.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 51.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 50.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 49.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 48.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 46.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 45.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 45.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 45.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 45.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 44.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 44.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 44.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 43.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 43.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 43.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 43.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 42.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 42.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 42.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 42.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 42.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 42.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 41.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 41.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 40.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 40.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 40.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 40.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 40.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 40.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 40.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 40.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 39.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 39.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 39.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 39.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 39.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 39.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 39.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 38.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 38.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 38.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 38.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 38.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 38.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 38.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 38.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 37.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 37.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 37.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 37.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 37.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 37.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 36.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 36.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 36.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 36.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 36.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 36.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 36.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 36.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 36.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 36.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 36.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 36.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 36.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 35.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 35.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 35.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 35.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 35.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 35.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 35.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 35.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 35.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 35.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 35.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 35.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 35.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 35.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 35.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 34.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 34.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 34.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 34.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 34.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 34.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 34.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 34.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 34.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 34.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 34.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 34.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 34.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 33.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 33.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 33.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 33.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 33.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 33.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 33.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 33.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 33.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 33.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 33.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 33.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 32.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 32.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 32.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 32.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 32.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 32.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 32.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 32.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 32.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 32.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 32.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 32.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 32.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 32.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 32.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 32.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 31.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 31.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 31.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 31.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 31.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 31.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 31.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 31.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 31.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 31.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 31.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 31.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 31.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 31.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 31.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 31.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 31.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 30.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 30.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 30.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 30.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 30.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 30.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 30.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 30.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 30.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 30.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 30.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 30.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 30.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 30.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 30.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 30.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 30.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 30.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 30.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 29.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 29.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 29.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 29.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 29.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 29.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 29.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 29.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 29.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 29.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 28.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 28.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 28.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 28.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 28.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 28.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 28.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 28.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 28.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 28.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 28.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 27.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 27.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 27.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 27.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 27.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 27.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 27.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 27.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 27.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 27.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 27.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 27.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 27.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 27.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 26.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 26.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 26.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 26.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 26.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 26.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 26.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 26.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 26.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 26.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 26.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 26.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 26.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 26.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 26.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 25.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 25.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 25.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 25.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 25.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 25.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 24.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 24.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 24.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 24.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 24.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 24.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 24.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 24.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 23.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 23.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 23.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 23.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 23.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 23.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 23.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 22.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 22.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 22.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 21.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 21.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 21.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 21.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 21.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 20.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 20.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

123.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 123.8
FF:10164-103B2 76 years, female 123.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.2
Pig sample Sample description nTPM
Caudate
nTPM: 110.2
Samples: 4

Max nTPM: 120.2
Min nTPM: 103.3
Sample A Female 120.2
Sample B Female 103.3
Sample C Male 110.8
Sample D Male 106.6

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