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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Neuronal projections: Medium
Synapses: Medium
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

73.211
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:430.2 nTPM
GTEx:154.4 nTPM
FANTOM5:1587.6 Scaled Tags Per Million

HIPPOCAMPUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA008273
Glial cells Not detected
Neuronal cells High
Neuronal projections Medium
Synapses Medium

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA008273Antibody HPA012828Antibody CAB001984
Glial cells Not detectedNot detectedNot detected
Neuronal cells HighMediumMedium






HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA012828
Hippocampal formation mean intensity 73.211
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 29.728
Molecular layer of the dentate gyrus 26.627
Granular dentate gyrus 11.263
CA1 - oriens layer 39.920
CA1 - pyramidal layer 26.421
CA1 - radiatum layer 32.974
CA2 - oriens layer 64.300
CA2 - pyramidal layer 46.359
CA2 - radiatum layer 50.648
CA3 - oriens layer 63.516
CA3 - pyramidal layer 33.410
CA3 - radiatum layer 52.769
Stratum lucidum 27.688
Lacunosum moleculare 41.258
Subiculum 73.211

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

430.2
Sample id Sample description nTPM
Hippocampus
nTPM: 430.2
2621 Female, age 67, right hemisphere 567.8
1898 Male, age 80, left hemisphere 526.6
2148 Female, age 91, left hemisphere 448.7
1855 Male, age 76, left hemisphere 402.4
1911 Female, age 85, right hemisphere 346.8
2529 Female, age 94, left hemisphere 289.2

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 154.4
Samples: 197

Max nTPM: 539.7
Min nTPM: 11.2
Std nTPM: 106.5
Median nTPM: 143.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 539.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 508.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 444.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 442.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 406.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 401.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 401.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 391.5
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 368.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 368.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 357.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 321.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 321.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 318.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 317.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 315.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 314.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 311.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 309.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 299.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 296.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 296.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 292.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 288.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 286.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 286.3
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 282.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 270.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 269.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 269.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 267.9
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 265.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 256.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 256.0
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 252.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 249.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 248.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 241.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 240.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 240.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 239.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 237.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 234.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 229.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 227.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 226.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 221.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 217.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 217.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 216.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 213.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 212.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 208.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 206.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 204.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 204.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 202.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 200.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 197.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 197.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 195.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 194.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 193.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 190.4
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 188.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 187.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 185.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 183.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 181.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 181.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 180.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 180.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 180.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 173.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 173.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 172.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 172.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 171.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 169.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 166.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 166.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 161.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 161.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 159.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 157.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 156.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 156.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 155.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 154.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 150.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 147.7
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 146.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 145.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 144.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 144.7
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 144.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 144.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 144.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 143.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 141.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 131.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 129.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 129.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 128.1
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 127.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 127.0
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 125.9
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 122.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 122.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 118.6
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 118.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 118.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 116.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 112.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 111.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 110.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 108.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 107.2
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 104.9
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 104.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 104.1
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 102.9
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 102.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 96.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 96.3
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 95.7
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 95.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 94.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 93.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 93.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 91.9
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 89.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 87.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 85.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 85.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 84.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 83.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 76.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 76.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 75.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 72.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 72.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 71.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 70.8
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 69.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 69.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 69.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 68.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 66.0
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 62.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 61.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 61.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 61.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 60.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 60.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 58.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 58.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 57.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 52.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 51.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 50.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 49.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 49.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 45.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 43.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 42.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 42.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 42.0
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 41.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 39.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 38.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 38.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 37.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 35.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 34.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 34.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 33.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 33.7
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 33.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 32.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 31.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 31.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 28.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 28.3
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 28.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 27.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 26.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 24.6
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 24.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 23.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 22.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 19.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 17.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 16.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 12.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 12.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 11.2
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1587.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1587.6
FF:10169-103B7 60 years, female 2309.8
FF:10153-102I9 76 years, female 865.5

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