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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:95.6 nTPM
FANTOM5:91.2 Scaled Tags Per Million
Pig:66.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA026864
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 95.6
Samples: 246

Max nTPM: 187.9
Min nTPM: 50.9
Std nTPM: 25.4
Median nTPM: 93.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 187.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 187.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 181.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 179.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 172.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 165.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 164.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 157.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 155.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 147.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 144.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 143.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 141.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 139.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 137.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 136.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 135.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 132.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 131.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 131.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 130.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 130.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 127.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 126.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 126.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 125.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 125.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 125.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 123.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 123.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 122.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 122.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 122.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 122.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 122.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 121.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 121.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 119.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 118.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 117.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 117.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 116.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 115.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 115.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 114.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 114.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 114.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 114.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 113.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 113.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 113.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 113.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 113.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 113.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 112.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 112.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 111.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 110.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 110.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 110.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 109.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 109.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 109.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 109.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 109.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 109.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 109.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 109.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 108.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 108.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 107.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 107.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 107.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 106.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 105.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 105.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 105.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 103.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 101.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 101.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 101.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 101.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 101.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 101.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 100.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 100.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 99.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 99.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 99.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 98.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 98.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 98.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 98.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 98.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 98.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 97.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 97.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 97.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 97.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 96.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 96.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 96.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 96.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 96.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 96.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 96.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 95.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 95.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 95.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 95.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 95.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 95.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 95.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 95.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 95.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 94.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 94.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 94.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 94.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 94.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 93.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 93.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 93.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 93.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 93.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 92.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 92.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 92.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 92.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 91.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 91.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 91.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 91.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 91.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 90.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 90.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 90.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 89.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 89.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 89.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 89.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 88.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 88.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 88.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 87.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 87.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 86.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 86.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 86.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 85.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 85.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 84.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 84.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 83.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 83.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 83.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 83.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 83.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 83.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 83.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 83.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 83.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 82.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 82.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 82.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 82.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 82.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 81.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 81.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 80.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 79.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 79.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 78.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 78.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 78.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 78.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 78.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 78.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 78.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 78.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 77.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 77.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 77.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 77.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 77.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 77.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 77.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 77.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 77.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 77.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 77.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 76.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 76.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 76.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 76.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 75.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 74.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 74.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 74.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 73.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 72.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 72.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 72.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 72.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 71.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 71.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 70.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 70.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 70.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 69.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 69.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 68.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 68.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 68.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 68.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 68.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 68.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 68.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 68.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 66.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 66.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 66.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 66.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 65.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 65.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 64.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 63.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 63.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 63.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 63.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 63.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 62.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 62.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 62.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 61.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 60.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 60.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 60.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 60.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 58.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 58.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 58.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 58.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 53.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 52.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 50.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 91.2
FF:10164-103B2 76 years, female 91.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.7
Pig sample Sample description nTPM
Caudate
nTPM: 66.7
Samples: 4

Max nTPM: 72.5
Min nTPM: 62.5
Sample A Female 67.4
Sample B Female 64.5
Sample C Male 72.5
Sample D Male 62.5

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