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SLC1A3
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  • SLC1A3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:358.1 nTPM
FANTOM5:1388.3 Scaled Tags Per Million
Pig:786.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA037467Antibody CAB002573
Glial cells MediumMedium
Neuronal cells Not detectedNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

358.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 358.1
Samples: 246

Max nTPM: 807.4
Min nTPM: 53.9
Std nTPM: 149.8
Median nTPM: 339.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 807.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 791.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 784.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 744.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 740.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 730.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 710.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 684.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 683.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 677.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 661.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 658.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 655.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 649.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 633.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 630.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 628.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 623.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 622.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 617.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 608.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 596.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 579.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 562.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 560.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 558.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 551.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 542.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 539.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 539.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 535.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 534.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 528.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 528.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 527.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 523.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 516.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 513.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 513.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 509.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 506.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 494.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 490.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 490.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 485.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 482.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 481.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 476.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 472.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 472.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 471.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 469.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 466.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 466.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 461.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 460.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 457.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 452.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 448.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 441.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 439.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 439.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 437.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 436.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 432.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 431.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 430.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 429.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 427.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 421.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 419.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 414.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 413.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 412.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 411.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 408.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 407.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 406.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 405.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 405.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 405.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 403.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 400.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 399.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 399.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 397.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 394.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 389.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 389.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 388.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 387.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 383.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 383.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 380.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 379.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 379.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 377.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 377.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 375.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 374.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 374.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 372.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 371.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 370.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 370.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 368.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 367.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 367.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 366.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 365.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 363.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 362.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 356.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 353.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 352.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 348.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 344.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 344.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 343.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 343.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 342.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 341.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 340.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 339.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 337.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 332.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 332.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 327.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 325.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 324.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 322.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 322.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 319.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 315.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 313.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 312.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 311.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 311.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 309.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 309.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 304.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 304.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 303.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 301.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 301.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 301.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 300.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 298.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 297.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 295.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 295.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 295.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 292.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 289.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 289.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 288.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 286.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 284.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 284.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 282.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 281.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 281.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 281.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 278.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 276.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 275.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 273.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 272.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 270.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 268.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 268.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 267.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 267.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 264.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 264.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 263.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 262.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 261.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 261.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 260.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 258.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 255.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 254.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 254.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 254.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 254.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 248.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 247.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 247.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 246.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 244.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 241.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 241.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 240.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 238.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 237.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 234.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 233.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 229.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 228.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 226.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 222.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 221.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 221.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 218.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 217.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 217.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 215.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 213.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 209.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 209.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 209.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 208.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 206.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 205.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 204.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 202.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 202.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 199.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 195.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 194.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 193.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 192.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 190.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 189.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 188.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 186.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 184.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 181.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 178.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 173.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 165.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 164.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 158.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 157.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 155.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 142.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 127.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 125.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 102.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 80.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 67.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 64.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 55.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 54.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 53.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1388.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1388.3
FF:10164-103B2 76 years, female 1388.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

786.4
Pig sample Sample description nTPM
Caudate
nTPM: 786.4
Samples: 4

Max nTPM: 982.5
Min nTPM: 586.4
Sample A Female 586.4
Sample B Female 817.2
Sample C Male 982.5
Sample D Male 759.4

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