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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

60.064
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:284.7 nTPM
GTEx:215.9 nTPM
FANTOM5:1454.9 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA037467Antibody HPA037468Antibody CAB002573
Glial cells MediumLowLow
Neuronal cells Not detectedNot detectedNot detected






HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA037467
Hippocampal formation mean intensity 60.064
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 37.288
Molecular layer of the dentate gyrus 34.915
Granular dentate gyrus 19.503
CA1 - oriens layer 30.677
CA1 - pyramidal layer 30.645
CA1 - radiatum layer 30.050
CA2 - oriens layer 40.175
CA2 - pyramidal layer 35.261
CA2 - radiatum layer 38.877
CA3 - oriens layer 41.242
CA3 - pyramidal layer 35.541
CA3 - radiatum layer 53.829
Stratum lucidum 35.099
Lacunosum moleculare 24.346
Subiculum 24.259

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

284.7
Sample id Sample description nTPM
Hippocampus
nTPM: 284.7
2529 Female, age 94, left hemisphere 317.5
1911 Female, age 85, right hemisphere 297.4
1898 Male, age 80, left hemisphere 295.0
2148 Female, age 91, left hemisphere 275.9
1855 Male, age 76, left hemisphere 261.3
2621 Female, age 67, right hemisphere 261.3

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

215.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 215.9
Samples: 197

Max nTPM: 885.4
Min nTPM: 38.6
Std nTPM: 121.4
Median nTPM: 193.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 885.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 599.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 563.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 552.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 498.2
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 492.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 482.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 461.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 455.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 454.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 447.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 442.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 436.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 426.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 425.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 419.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 413.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 388.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 386.6
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 371.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 368.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 365.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 360.0
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 356.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 354.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 350.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 350.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 341.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 338.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 326.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 319.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 318.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 314.6
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 311.8
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 310.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 306.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 300.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 299.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 295.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 289.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 288.6
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 288.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 283.8
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 282.6
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 282.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 282.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 282.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 279.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 274.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 273.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 272.1
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 269.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 268.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 265.6
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 262.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 260.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 259.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 259.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 259.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 256.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 252.6
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 248.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 246.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 245.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 242.6
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 240.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 239.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 235.8
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 235.2
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 235.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 231.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 227.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 226.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 226.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 225.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 220.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 219.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 219.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 217.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 216.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 215.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 215.6
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 214.8
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 214.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 214.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 213.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 212.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 212.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 211.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 205.9
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 205.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 204.4
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 203.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 201.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 200.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 198.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 194.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 194.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 193.3
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 192.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 190.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 186.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 185.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 185.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 182.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 178.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 178.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 172.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 171.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 169.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 169.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 167.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 165.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 164.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 163.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 163.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 162.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 161.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 161.4
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 159.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 157.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 157.5
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 157.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 154.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 153.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 150.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 149.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 148.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 148.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 148.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 147.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 144.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 143.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 143.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 142.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 142.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 140.9
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 140.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 139.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 138.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 137.1
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 136.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 135.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 132.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 132.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 131.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 131.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 130.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 128.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 128.6
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 122.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 121.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 118.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 118.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 117.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 117.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 116.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 116.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 114.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 114.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 113.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 112.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 111.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 109.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 109.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 108.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 107.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 106.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 105.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 104.4
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 104.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 104.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 103.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 97.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 96.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 95.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 92.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 92.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 90.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 89.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 88.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 87.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 84.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 82.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 78.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 78.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 76.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 75.8
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 70.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 70.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 70.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 69.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 65.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 53.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 51.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 47.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 38.6
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1454.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1454.9
FF:10153-102I9 76 years, female 1656.3
FF:10169-103B7 60 years, female 1253.5

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