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CLDND1
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  • CLDND1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:244.8 nTPM
FANTOM5:242.8 Scaled Tags Per Million
Pig:37.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA029841
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

244.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 244.8
Samples: 246

Max nTPM: 1076.7
Min nTPM: 73.7
Std nTPM: 128.5
Median nTPM: 219.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1076.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 731.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 695.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 619.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 605.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 583.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 555.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 548.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 542.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 518.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 506.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 491.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 487.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 463.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 462.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 458.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 448.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 439.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 439.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 438.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 431.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 429.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 424.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 414.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 412.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 405.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 405.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 404.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 398.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 394.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 390.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 380.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 371.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 367.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 366.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 356.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 355.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 354.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 351.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 351.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 351.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 348.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 345.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 335.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 334.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 334.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 332.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 330.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 325.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 321.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 318.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 314.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 312.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 308.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 306.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 306.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 305.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 299.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 297.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 296.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 296.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 293.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 290.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 290.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 288.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 280.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 280.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 280.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 277.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 277.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 273.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 273.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 272.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 272.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 271.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 270.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 269.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 269.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 267.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 266.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 266.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 266.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 264.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 262.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 262.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 255.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 250.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 249.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 247.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 244.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 242.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 241.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 241.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 241.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 240.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 238.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 237.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 237.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 236.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 235.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 235.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 235.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 234.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 233.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 232.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 231.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 230.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 229.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 228.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 228.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 228.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 228.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 227.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 226.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 225.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 224.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 224.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 223.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 223.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 222.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 221.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 220.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 219.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 219.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 217.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 216.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 216.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 214.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 214.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 212.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 210.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 209.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 209.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 209.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 208.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 207.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 205.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 204.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 203.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 203.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 201.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 199.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 198.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 198.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 194.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 190.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 188.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 186.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 185.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 185.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 184.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 184.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 183.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 181.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 180.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 179.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 179.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 177.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 176.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 176.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 175.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 175.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 175.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 175.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 173.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 173.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 173.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 173.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 172.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 171.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 170.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 169.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 168.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 167.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 166.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 166.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 166.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 165.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 164.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 161.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 160.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 160.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 159.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 158.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 157.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 152.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 152.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 151.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 151.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 149.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 148.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 146.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 146.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 145.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 145.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 145.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 144.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 144.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 143.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 140.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 140.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 139.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 139.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 138.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 137.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 136.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 135.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 134.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 134.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 133.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 132.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 130.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 130.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 130.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 130.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 129.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 128.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 126.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 125.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 123.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 122.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 122.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 122.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 121.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 120.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 120.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 120.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 119.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 119.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 118.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 118.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 116.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 109.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 107.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 106.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 106.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 96.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 95.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 95.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 93.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 93.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 92.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 92.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 87.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 85.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 73.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

242.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 242.8
FF:10164-103B2 76 years, female 242.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.6
Pig sample Sample description nTPM
Caudate
nTPM: 37.7
Samples: 4

Max nTPM: 40.2
Min nTPM: 33.4
Sample A Female 40.2
Sample B Female 38.3
Sample C Male 33.4
Sample D Male 38.7

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