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  • SMARCD3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:110.2 nTPM
FANTOM5:109.6 Scaled Tags Per Million
Pig:74.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA063955
Glial cells Low
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 110.2
Samples: 246

Max nTPM: 217.5
Min nTPM: 40.6
Std nTPM: 30.0
Median nTPM: 106.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 217.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 200.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 191.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 188.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 185.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 184.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 183.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 183.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 177.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 169.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 167.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 166.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 164.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 163.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 160.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 158.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 156.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 155.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 154.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 153.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 153.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 151.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 151.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 151.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 150.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 150.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 148.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 148.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 147.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 147.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 145.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 144.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 144.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 143.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 141.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 141.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 141.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 140.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 140.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 139.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 139.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 138.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 138.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 138.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 136.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 135.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 135.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 134.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 134.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 133.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 132.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 131.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 130.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 129.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 129.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 129.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 128.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 128.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 128.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 126.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 126.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 125.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 125.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 124.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 123.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 123.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 123.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 122.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 122.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 121.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 120.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 119.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 119.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 119.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 118.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 118.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 118.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 117.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 117.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 117.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 117.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 116.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 116.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 116.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 116.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 115.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 115.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 115.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 115.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 115.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 115.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 114.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 114.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 114.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 113.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 113.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 112.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 112.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 112.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 112.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 112.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 112.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 112.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 112.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 111.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 111.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 111.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 111.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 111.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 111.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 110.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 109.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 109.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 108.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 108.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 108.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 108.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 107.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 107.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 107.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 107.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 107.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 107.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 106.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 106.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 105.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 105.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 105.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 105.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 105.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 105.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 105.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 105.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 105.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 105.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 105.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 104.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 104.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 104.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 104.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 104.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 103.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 103.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 103.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 103.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 102.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 102.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 102.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 102.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 102.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 101.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 101.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 101.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 100.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 100.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 100.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 100.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 99.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 99.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 99.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 99.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 98.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 98.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 98.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 98.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 98.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 98.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 98.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 97.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 97.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 97.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 96.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 95.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 95.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 95.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 95.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 95.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 94.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 94.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 94.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 94.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 93.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 93.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 93.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 92.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 92.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 92.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 92.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 91.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 91.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 91.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 89.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 88.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 87.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 87.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 86.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 86.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 86.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 86.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 85.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 83.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 82.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 81.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 81.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 81.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 80.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 79.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 79.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 79.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 79.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 79.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 79.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 79.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 78.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 78.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 78.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 77.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 77.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 77.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 76.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 76.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 75.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 74.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 74.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 73.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 73.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 71.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 71.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 70.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 70.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 70.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 69.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 69.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 61.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 60.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 59.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 59.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 55.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 55.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 54.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 53.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 52.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 46.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 46.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 43.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 40.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

109.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 109.6
FF:10164-103B2 76 years, female 109.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.4
Pig sample Sample description nTPM
Caudate
nTPM: 74.4
Samples: 4

Max nTPM: 89.3
Min nTPM: 54.3
Sample A Female 54.3
Sample B Female 82.5
Sample C Male 89.3
Sample D Male 71.4

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