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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:117.1 nTPM
FANTOM5:175.6 Scaled Tags Per Million
Pig:68.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA045028
Glial cells High
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 117.1
Samples: 246

Max nTPM: 179.8
Min nTPM: 77.0
Std nTPM: 17.0
Median nTPM: 114.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 179.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 169.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 167.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 164.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 162.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 157.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 156.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 156.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 154.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 153.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 152.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 151.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 151.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 151.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 148.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 148.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 147.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 146.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 144.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 143.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 143.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 142.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 142.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 141.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 141.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 141.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 140.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 139.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 139.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 138.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 138.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 138.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 135.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 135.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 135.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 134.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 134.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 133.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 133.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 133.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 131.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 131.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 130.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 130.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 129.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 129.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 129.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 129.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 129.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 128.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 128.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 128.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 128.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 127.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 127.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 127.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 127.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 126.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 126.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 125.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 125.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 125.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 125.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 125.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 125.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 124.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 124.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 124.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 124.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 124.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 123.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 123.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 123.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 123.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 123.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 122.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 122.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 122.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 122.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 122.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 122.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 122.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 122.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 122.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 122.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 122.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 121.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 121.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 121.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 120.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 120.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 120.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 120.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 120.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 119.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 118.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 118.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 118.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 118.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 118.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 118.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 118.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 117.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 117.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 117.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 117.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 117.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 117.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 117.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 116.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 116.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 116.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 116.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 116.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 116.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 116.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 115.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 115.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 115.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 115.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 115.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 115.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 114.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 114.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 114.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 114.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 114.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 114.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 114.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 113.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 113.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 113.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 113.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 113.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 113.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 112.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 112.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 112.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 112.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 111.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 111.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 111.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 110.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 110.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 110.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 110.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 110.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 110.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 110.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 110.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 110.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 110.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 110.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 110.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 110.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 109.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 109.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 109.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 109.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 109.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 109.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 109.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 109.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 108.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 108.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 107.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 107.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 107.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 107.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 107.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 107.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 107.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 107.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 107.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 106.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 106.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 106.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 106.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 106.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 106.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 106.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 105.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 105.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 105.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 105.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 105.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 105.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 105.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 105.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 104.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 104.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 104.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 104.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 104.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 104.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 103.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 103.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 103.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 103.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 103.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 102.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 102.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 102.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 102.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 101.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 101.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 101.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 101.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 101.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 101.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 101.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 101.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 100.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 100.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 99.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 99.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 99.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 98.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 98.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 98.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 97.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 97.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 97.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 97.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 97.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 95.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 95.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 95.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 95.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 95.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 94.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 93.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 93.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 93.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 93.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 93.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 92.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 91.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 91.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 91.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 91.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 89.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 87.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 85.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 80.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 77.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

175.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 175.6
FF:10164-103B2 76 years, female 175.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.9
Pig sample Sample description nTPM
Caudate
nTPM: 68.9
Samples: 4

Max nTPM: 79.9
Min nTPM: 60.7
Sample A Female 62.3
Sample B Female 72.8
Sample C Male 79.9
Sample D Male 60.7

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