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MLF2
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:261.8 nTPM
FANTOM5:113.7 Scaled Tags Per Million
Pig:270.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA010811Antibody HPA010859
Glial cells MediumMedium
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

261.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 261.8
Samples: 246

Max nTPM: 480.8
Min nTPM: 111.4
Std nTPM: 70.7
Median nTPM: 264.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 480.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 479.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 449.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 444.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 426.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 421.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 420.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 420.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 418.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 399.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 392.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 391.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 378.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 375.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 373.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 372.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 368.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 363.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 362.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 360.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 358.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 358.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 354.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 350.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 350.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 349.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 347.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 347.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 341.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 340.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 337.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 336.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 336.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 334.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 333.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 332.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 330.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 329.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 327.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 326.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 326.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 325.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 325.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 324.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 324.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 323.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 321.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 319.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 318.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 315.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 313.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 311.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 311.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 311.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 311.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 311.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 309.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 309.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 308.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 306.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 305.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 305.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 304.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 304.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 303.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 302.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 301.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 301.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 301.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 300.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 300.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 299.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 298.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 296.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 293.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 293.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 291.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 291.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 291.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 290.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 289.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 288.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 288.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 288.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 287.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 286.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 286.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 286.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 285.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 284.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 284.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 284.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 283.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 283.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 281.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 279.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 279.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 279.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 279.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 278.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 278.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 278.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 278.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 276.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 276.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 274.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 274.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 273.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 272.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 271.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 270.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 269.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 269.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 268.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 268.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 268.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 267.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 266.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 266.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 265.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 265.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 265.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 265.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 264.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 264.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 263.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 263.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 262.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 261.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 260.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 259.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 256.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 256.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 255.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 254.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 252.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 251.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 251.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 249.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 247.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 247.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 246.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 246.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 244.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 244.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 244.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 243.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 242.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 242.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 241.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 240.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 239.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 239.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 239.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 239.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 235.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 234.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 234.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 232.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 232.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 230.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 229.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 228.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 227.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 225.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 225.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 223.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 223.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 223.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 223.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 221.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 218.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 217.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 216.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 216.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 216.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 215.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 215.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 214.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 213.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 212.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 212.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 211.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 208.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 207.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 207.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 207.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 206.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 205.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 203.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 203.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 201.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 200.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 200.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 198.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 198.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 198.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 195.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 192.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 191.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 191.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 191.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 190.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 189.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 187.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 186.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 186.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 185.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 184.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 184.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 184.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 184.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 183.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 182.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 182.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 180.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 179.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 178.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 170.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 170.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 169.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 168.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 167.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 166.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 165.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 164.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 162.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 161.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 161.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 159.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 159.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 158.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 156.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 155.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 154.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 148.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 146.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 142.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 139.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 137.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 133.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 132.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 128.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 127.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 125.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 111.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

113.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 113.7
FF:10164-103B2 76 years, female 113.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

270.0
Pig sample Sample description nTPM
Caudate
nTPM: 270.0
Samples: 4

Max nTPM: 332.6
Min nTPM: 224.4
Sample A Female 224.4
Sample B Female 289.2
Sample C Male 332.6
Sample D Male 233.7

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