We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MAST3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • MAST3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:37.1 nTPM
FANTOM5:152.4 Scaled Tags Per Million
Pig:101.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA035061Antibody HPA035062
Glial cells MediumNot detected
Neuronal cells HighMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 37.1
Samples: 246

Max nTPM: 72.2
Min nTPM: 6.8
Std nTPM: 13.7
Median nTPM: 38.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 72.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 70.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 66.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 65.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 65.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 65.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 63.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 63.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 62.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 61.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 61.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 61.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 60.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 59.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 58.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 58.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 58.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 56.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 56.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 56.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 56.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 55.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 55.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 54.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 54.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 54.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 53.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 53.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 53.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 52.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 52.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 52.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 52.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 52.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 52.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 52.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 52.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 50.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 50.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 50.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 49.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 49.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 49.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 49.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 49.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 49.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 49.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 49.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 49.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 48.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 48.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 48.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 48.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 48.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 48.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 48.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 48.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 48.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 47.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 46.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 46.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 46.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 46.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 46.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 46.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 46.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 45.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 45.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 45.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 45.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 45.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 45.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 45.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 45.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 44.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 44.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 44.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 44.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 44.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 43.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 43.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 43.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 43.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 43.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 42.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 42.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 42.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 42.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 42.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 42.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 42.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 41.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 41.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 41.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 41.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 41.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 41.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 41.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 41.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 41.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 41.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 40.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 40.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 40.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 40.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 40.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 40.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 39.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 39.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 39.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 39.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 39.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 39.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 39.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 39.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 39.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 38.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 38.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 38.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 38.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 38.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 38.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 38.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 37.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 37.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 37.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 37.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 37.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 37.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 37.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 37.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 37.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 37.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 36.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 36.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 36.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 36.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 36.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 36.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 35.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 35.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 35.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 35.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 34.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 34.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 34.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 34.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 34.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 33.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 33.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 33.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 33.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 33.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 32.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 32.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 32.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 32.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 32.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 32.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 31.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 31.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 31.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 31.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 31.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 30.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 30.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 30.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 30.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 30.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 30.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 29.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 29.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 29.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 29.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 29.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 29.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 29.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 28.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 28.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 28.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 27.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 26.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 26.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 26.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 26.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 26.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 26.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 26.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 25.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 25.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 24.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 24.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 23.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 23.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 23.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 23.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 22.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 22.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 22.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 22.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 22.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 22.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 22.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 22.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 21.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 21.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 21.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 21.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 21.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 21.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 20.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 20.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 20.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 20.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 19.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 19.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 18.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 18.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 18.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 17.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 17.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 17.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 17.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 17.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 17.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 16.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 16.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 16.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 16.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 15.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 15.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 15.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 14.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 14.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 14.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 14.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 13.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 13.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 12.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 12.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 12.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 12.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 12.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 10.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 9.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 6.8
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

152.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 152.4
FF:10164-103B2 76 years, female 152.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.3
Pig sample Sample description nTPM
Caudate
nTPM: 101.3
Samples: 4

Max nTPM: 120.3
Min nTPM: 79.1
Sample A Female 79.1
Sample B Female 104.0
Sample C Male 120.3
Sample D Male 101.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org