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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:121.3 nTPM
FANTOM5:131.7 Scaled Tags Per Million
Pig:0.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA029199
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

121.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 121.3
Samples: 246

Max nTPM: 250.0
Min nTPM: 75.5
Std nTPM: 26.7
Median nTPM: 118.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 250.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 231.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 199.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 187.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 186.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 186.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 185.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 185.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 181.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 180.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 180.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 180.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 179.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 178.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 174.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 168.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 167.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 165.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 164.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 161.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 161.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 160.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 160.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 159.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 155.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 155.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 153.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 153.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 153.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 152.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 152.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 149.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 146.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 145.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 145.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 143.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 143.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 142.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 141.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 141.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 141.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 140.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 140.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 140.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 139.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 138.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 138.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 138.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 137.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 137.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 136.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 135.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 134.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 133.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 133.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 133.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 133.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 133.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 133.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 133.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 132.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 132.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 132.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 131.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 131.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 131.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 130.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 130.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 130.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 130.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 130.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 129.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 129.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 129.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 129.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 129.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 128.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 128.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 128.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 127.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 127.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 127.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 127.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 127.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 126.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 126.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 126.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 126.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 125.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 125.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 125.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 125.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 124.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 124.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 124.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 124.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 123.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 123.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 122.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 122.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 122.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 122.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 122.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 122.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 122.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 121.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 121.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 121.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 121.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 121.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 121.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 121.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 121.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 121.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 121.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 120.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 120.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 119.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 119.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 119.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 118.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 118.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 118.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 118.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 118.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 117.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 116.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 116.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 116.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 116.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 115.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 115.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 115.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 115.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 115.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 115.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 114.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 114.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 114.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 114.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 114.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 114.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 114.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 113.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 113.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 113.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 113.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 113.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 113.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 113.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 112.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 112.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 111.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 111.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 111.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 111.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 109.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 109.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 109.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 109.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 108.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 108.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 108.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 108.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 107.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 107.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 107.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 107.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 106.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 106.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 106.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 105.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 105.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 105.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 105.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 105.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 105.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 105.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 104.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 104.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 104.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 104.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 104.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 103.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 103.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 102.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 102.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 102.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 102.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 102.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 101.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 101.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 101.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 101.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 100.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 100.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 99.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 99.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 99.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 99.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 98.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 98.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 97.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 97.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 97.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 97.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 96.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 96.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 95.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 95.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 95.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 95.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 94.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 94.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 94.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 94.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 94.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 93.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 93.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 92.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 91.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 90.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 90.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 90.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 89.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 89.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 88.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 88.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 86.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 86.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 85.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 85.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 85.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 85.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 84.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 83.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 83.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 82.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 82.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 82.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 81.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 81.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 80.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 77.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 77.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 75.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

131.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 131.7
FF:10164-103B2 76 years, female 131.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.1
Pig sample Sample description nTPM
Caudate
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.2
Sample C Male 0.2
Sample D Male 0.0

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