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SEPTIN3
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:112.6 nTPM
FANTOM5:88.7 Scaled Tags Per Million
Pig:140.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003548Antibody CAB017633
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 112.6
Samples: 246

Max nTPM: 280.7
Min nTPM: 37.0
Std nTPM: 34.6
Median nTPM: 109.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 280.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 246.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 204.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 199.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 195.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 189.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 186.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 180.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 179.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 167.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 167.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 165.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 165.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 165.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 164.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 162.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 162.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 160.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 160.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 159.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 158.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 156.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 155.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 155.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 153.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 153.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 152.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 151.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 151.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 149.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 147.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 147.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 146.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 146.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 145.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 144.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 144.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 144.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 144.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 143.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 143.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 143.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 142.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 141.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 141.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 140.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 140.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 140.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 138.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 138.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 137.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 137.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 136.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 136.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 135.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 135.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 135.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 134.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 134.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 134.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 133.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 133.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 133.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 132.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 131.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 131.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 130.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 130.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 129.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 129.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 129.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 129.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 128.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 128.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 127.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 127.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 127.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 127.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 126.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 126.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 126.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 125.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 125.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 125.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 123.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 123.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 123.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 123.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 123.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 122.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 121.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 121.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 121.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 121.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 121.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 120.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 120.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 120.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 120.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 120.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 119.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 119.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 119.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 119.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 118.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 118.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 117.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 117.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 116.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 116.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 116.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 115.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 115.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 115.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 114.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 114.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 113.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 113.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 113.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 113.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 110.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 110.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 109.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 109.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 109.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 108.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 108.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 108.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 108.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 108.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 107.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 107.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 107.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 106.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 106.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 106.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 106.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 106.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 105.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 105.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 105.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 104.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 104.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 104.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 104.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 104.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 103.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 103.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 103.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 103.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 103.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 103.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 102.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 102.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 102.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 101.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 101.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 101.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 101.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 100.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 100.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 100.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 99.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 98.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 98.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 96.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 96.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 95.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 95.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 95.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 95.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 94.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 94.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 94.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 94.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 94.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 93.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 93.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 93.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 92.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 92.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 92.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 91.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 89.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 89.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 88.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 88.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 88.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 87.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 86.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 86.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 86.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 85.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 85.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 84.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 83.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 82.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 82.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 82.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 82.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 81.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 80.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 80.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 80.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 79.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 79.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 79.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 78.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 77.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 77.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 77.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 77.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 77.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 76.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 76.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 75.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 75.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 73.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 72.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 70.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 70.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 69.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 68.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 67.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 67.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 66.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 65.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 64.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 63.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 62.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 62.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 60.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 60.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 59.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 56.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 55.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 55.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 54.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 54.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 54.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 48.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 45.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 44.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 43.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 40.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 37.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

88.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 88.7
FF:10164-103B2 76 years, female 88.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.7
Pig sample Sample description nTPM
Caudate
nTPM: 140.7
Samples: 4

Max nTPM: 165.9
Min nTPM: 122.8
Sample A Female 130.8
Sample B Female 143.4
Sample C Male 165.9
Sample D Male 122.8

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