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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:91.7 nTPM
FANTOM5:146.7 Scaled Tags Per Million
Pig:120.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043233Antibody HPA046412Antibody HPA047114Antibody HPA047116
Glial cells LowHighLowLow
Neuronal cells MediumLowNot detectedMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 91.7
Samples: 246

Max nTPM: 245.4
Min nTPM: 55.6
Std nTPM: 21.4
Median nTPM: 88.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 245.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 175.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 155.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 154.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 153.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 148.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 144.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 144.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 136.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 135.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 132.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 131.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 129.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 126.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 123.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 121.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 120.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 119.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 119.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 118.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 118.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 118.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 117.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 117.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 116.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 115.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 115.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 115.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 114.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 113.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 113.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 112.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 111.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 111.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 109.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 108.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 108.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 108.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 107.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 107.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 107.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 107.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 106.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 106.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 106.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 106.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 105.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 105.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 105.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 105.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 104.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 104.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 104.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 103.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 102.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 101.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 101.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 101.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 100.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 100.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 100.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 99.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 99.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 99.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 99.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 98.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 97.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 97.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 97.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 97.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 97.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 97.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 96.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 96.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 96.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 96.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 96.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 96.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 96.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 95.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 95.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 95.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 94.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 94.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 94.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 93.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 93.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 93.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 93.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 93.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 93.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 93.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 92.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 92.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 92.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 92.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 92.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 92.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 92.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 91.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 91.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 91.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 91.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 91.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 91.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 90.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 90.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 90.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 90.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 90.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 90.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 90.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 89.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 89.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 89.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 89.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 89.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 88.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 88.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 88.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 88.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 88.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 88.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 88.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 88.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 88.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 87.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 87.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 87.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 87.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 87.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 87.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 87.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 87.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 86.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 86.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 86.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 86.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 86.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 85.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 85.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 85.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 84.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 84.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 84.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 84.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 84.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 84.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 84.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 84.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 84.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 83.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 83.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 83.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 83.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 82.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 82.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 82.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 82.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 82.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 82.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 82.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 82.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 82.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 82.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 81.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 81.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 81.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 81.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 81.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 81.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 80.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 80.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 80.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 80.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 80.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 80.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 80.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 80.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 80.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 80.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 79.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 78.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 78.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 78.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 77.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 77.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 77.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 77.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 77.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 77.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 76.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 76.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 76.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 76.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 75.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 75.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 75.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 75.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 75.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 74.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 74.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 74.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 74.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 74.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 74.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 74.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 73.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 73.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 73.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 73.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 72.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 72.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 71.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 71.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 71.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 70.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 70.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 70.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 69.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 69.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 69.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 69.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 69.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 69.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 69.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 68.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 68.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 68.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 68.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 68.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 67.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 66.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 66.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 64.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 64.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 63.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 63.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 63.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 62.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 62.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 62.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 59.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 58.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 58.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 55.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

146.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 146.7
FF:10164-103B2 76 years, female 146.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.6
Pig sample Sample description nTPM
Caudate
nTPM: 120.6
Samples: 4

Max nTPM: 131.9
Min nTPM: 115.4
Sample A Female 119.5
Sample B Female 115.4
Sample C Male 131.9
Sample D Male 115.5

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