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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:122.5 nTPM
GTEx:100.4 nTPM
FANTOM5:119.3 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043233Antibody HPA046412Antibody HPA047114Antibody HPA047116
Glial cells MediumMediumLowLow
Neuronal cells MediumLowNot detectedMedium









HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.5
Sample id Sample description nTPM
Hippocampus
nTPM: 122.5
2529 Female, age 94, left hemisphere 136.1
1898 Male, age 80, left hemisphere 134.5
1855 Male, age 76, left hemisphere 124.0
1911 Female, age 85, right hemisphere 114.6
2621 Female, age 67, right hemisphere 114.5
2148 Female, age 91, left hemisphere 111.3

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 100.4
Samples: 197

Max nTPM: 252.2
Min nTPM: 53.6
Std nTPM: 29.3
Median nTPM: 95.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 252.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 183.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 180.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 180.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 180.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 178.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 176.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 169.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 166.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 163.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 156.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 154.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 154.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 150.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 145.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 144.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 141.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 140.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 139.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 138.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 138.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 137.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 136.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 134.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 133.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 131.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 131.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 131.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 129.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 126.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 124.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 123.4
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 122.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 120.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 120.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 120.7
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 118.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 117.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 117.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 117.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 116.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 115.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 115.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 114.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 114.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 114.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 113.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 113.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 112.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 112.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 111.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 111.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 111.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 109.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 109.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 109.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 109.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 108.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 108.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 108.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 108.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 108.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 107.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 107.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 107.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 106.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 106.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 106.4
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 105.4
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 104.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 103.4
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 103.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 102.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 102.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 102.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 101.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 101.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 101.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 100.9
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 100.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 100.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 100.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 100.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 99.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 99.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 99.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 99.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 99.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 99.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 98.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 97.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 97.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 97.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 97.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 96.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 96.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 96.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 96.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 95.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 95.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 95.4
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 95.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 95.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 95.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 94.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 94.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 94.2
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 94.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 93.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 93.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 93.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 92.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 92.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 91.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 90.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 90.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 88.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 88.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 88.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 88.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 88.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 88.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 87.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 87.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 87.1
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 86.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 86.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 86.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 86.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 85.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 85.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 85.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 85.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 85.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 85.4
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 85.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 85.2
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 85.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 84.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 84.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 83.2
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 83.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 82.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 81.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 81.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 80.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 80.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 79.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 79.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 79.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 78.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 78.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 77.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 77.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 77.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 77.6
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 77.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 76.4
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 76.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 75.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 75.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 75.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 74.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 73.9
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 73.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 73.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 73.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 73.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 73.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 72.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 72.9
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 71.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 70.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 70.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 70.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 70.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 69.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 69.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 68.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 68.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 68.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 68.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 66.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 65.9
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 64.4
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 63.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 63.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 63.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 63.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 63.0
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 62.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 61.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 60.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 57.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 56.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 54.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 53.6
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

119.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 119.3
FF:10153-102I9 76 years, female 154.6
FF:10169-103B7 60 years, female 84.1

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