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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

75.329
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:163.1 nTPM
GTEx:146.9 nTPM
FANTOM5:219.9 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001097
Glial cells High
Neuronal cells High



HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA001097
Hippocampal formation mean intensity 75.329
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 41.987
Molecular layer of the dentate gyrus 43.981
Granular dentate gyrus 60.601
CA1 - oriens layer 54.915
CA1 - pyramidal layer 74.109
CA1 - radiatum layer 50.949
CA2 - oriens layer 47.441
CA2 - pyramidal layer 75.329
CA2 - radiatum layer 49.184
CA3 - oriens layer 56.222
CA3 - pyramidal layer 60.698
CA3 - radiatum layer 48.631
Stratum lucidum 47.076
Lacunosum moleculare 45.042
Subiculum 26.215

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.1
Sample id Sample description nTPM
Hippocampus
nTPM: 163.1
1898 Male, age 80, left hemisphere 224.9
2529 Female, age 94, left hemisphere 166.3
1855 Male, age 76, left hemisphere 159.3
2621 Female, age 67, right hemisphere 149.1
1911 Female, age 85, right hemisphere 140.3
2148 Female, age 91, left hemisphere 138.9

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 146.9
Samples: 197

Max nTPM: 337.2
Min nTPM: 53.9
Std nTPM: 42.8
Median nTPM: 139.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 337.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 268.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 244.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 243.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 242.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 234.8
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 233.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 224.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 222.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 221.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 221.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 221.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 219.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 218.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 216.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 213.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 211.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 211.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 207.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 207.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 204.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 201.1
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 198.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 197.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 197.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 196.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 195.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 193.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 192.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 192.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 191.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 191.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 190.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 187.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 187.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 187.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 186.9
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 181.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 179.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 178.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 178.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 176.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 175.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 174.9
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 174.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 173.4
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 172.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 171.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 169.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 169.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 169.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 167.6
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 166.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 166.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 165.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 164.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 162.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 161.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 160.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 160.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 160.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 160.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 160.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 160.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 159.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 159.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 159.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 159.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 159.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 158.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 158.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 157.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 157.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 155.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 154.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 153.1
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 152.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 152.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 152.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 152.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 150.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 150.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 149.4
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 149.1
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 147.3
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 147.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 146.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 146.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 146.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 145.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 145.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 143.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 143.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 143.1
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 142.4
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 142.2
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 141.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 141.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 139.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 139.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 139.4
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 139.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 139.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 138.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 138.5
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 138.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 137.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 137.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 136.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 136.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 136.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 136.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 136.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 136.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 135.3
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 135.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 134.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 134.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 134.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 133.9
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 133.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 133.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 132.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 132.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 132.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 131.8
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 131.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 130.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 130.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 129.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 129.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 127.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 127.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 126.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 126.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 126.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 125.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 125.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 124.5
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 124.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 124.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 123.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 123.6
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 123.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 122.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 122.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 122.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 121.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 121.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 121.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 120.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 120.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 119.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 118.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 118.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 118.5
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 116.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 114.6
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 114.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 113.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 112.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 111.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 110.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 110.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 110.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 108.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 107.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 107.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 106.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 103.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 102.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 100.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 100.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 98.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 98.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 96.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 94.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 93.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 91.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 90.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 90.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 89.6
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 85.8
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 85.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 84.1
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 80.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 79.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 77.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 77.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 73.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 72.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 72.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 70.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 67.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 66.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 66.9
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 53.9
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

219.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 219.9
FF:10169-103B7 60 years, female 228.4
FF:10153-102I9 76 years, female 211.3

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