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  • PABPN1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:159.7 nTPM
FANTOM5:180.4 Scaled Tags Per Million
Pig:84.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA000637
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 159.7
Samples: 246

Max nTPM: 273.3
Min nTPM: 70.0
Std nTPM: 29.2
Median nTPM: 158.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 273.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 228.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 223.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 219.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 218.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 218.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 218.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 217.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 217.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 216.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 216.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 213.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 209.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 208.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 208.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 207.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 206.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 204.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 203.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 203.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 201.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 201.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 201.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 200.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 200.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 199.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 198.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 194.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 193.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 192.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 192.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 191.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 189.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 189.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 189.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 189.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 188.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 187.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 187.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 187.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 186.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 186.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 186.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 186.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 185.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 185.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 185.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 184.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 184.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 184.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 183.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 183.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 182.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 181.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 181.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 180.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 180.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 180.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 180.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 179.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 179.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 179.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 178.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 178.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 178.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 177.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 177.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 177.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 177.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 176.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 176.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 174.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 174.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 173.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 173.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 173.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 172.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 172.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 172.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 172.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 171.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 171.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 171.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 171.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 170.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 169.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 169.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 169.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 169.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 169.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 169.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 168.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 168.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 167.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 167.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 167.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 166.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 166.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 165.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 165.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 165.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 164.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 164.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 164.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 163.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 163.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 163.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 163.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 162.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 162.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 161.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 161.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 161.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 160.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 160.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 160.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 160.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 160.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 160.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 160.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 159.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 158.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 158.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 157.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 157.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 157.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 157.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 157.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 156.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 156.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 156.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 156.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 156.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 155.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 155.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 155.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 153.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 153.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 153.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 153.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 152.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 152.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 152.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 152.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 151.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 151.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 151.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 150.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 150.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 149.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 149.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 149.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 148.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 148.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 148.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 148.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 147.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 147.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 147.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 147.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 147.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 146.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 146.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 146.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 145.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 145.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 145.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 145.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 145.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 144.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 144.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 144.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 144.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 144.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 144.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 144.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 144.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 144.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 143.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 142.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 141.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 141.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 141.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 140.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 140.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 139.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 139.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 139.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 138.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 138.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 138.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 137.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 137.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 137.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 137.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 137.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 136.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 136.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 136.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 136.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 136.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 134.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 134.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 134.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 134.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 133.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 133.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 133.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 133.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 130.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 129.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 128.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 128.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 127.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 126.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 126.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 126.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 126.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 124.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 120.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 120.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 120.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 119.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 118.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 118.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 118.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 117.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 117.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 117.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 116.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 115.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 115.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 113.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 110.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 110.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 109.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 108.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 107.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 107.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 106.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 105.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 103.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 100.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 99.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 99.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 70.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

180.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 180.4
FF:10164-103B2 76 years, female 180.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.2
Pig sample Sample description nTPM
Caudate
nTPM: 84.2
Samples: 4

Max nTPM: 92.9
Min nTPM: 76.4
Sample A Female 76.4
Sample B Female 92.9
Sample C Male 83.2
Sample D Male 84.2

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