We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
C20orf27
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • C20orf27
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:276.4 nTPM
FANTOM5:171.1 Scaled Tags Per Million
Pig:126.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047483
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

276.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 276.4
Samples: 246

Max nTPM: 684.7
Min nTPM: 20.2
Std nTPM: 104.9
Median nTPM: 278.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 684.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 533.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 531.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 522.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 507.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 501.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 495.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 468.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 463.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 462.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 460.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 448.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 446.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 443.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 441.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 438.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 438.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 437.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 436.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 433.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 432.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 427.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 417.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 415.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 414.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 402.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 400.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 399.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 397.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 395.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 391.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 390.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 389.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 386.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 383.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 382.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 381.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 379.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 377.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 377.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 376.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 375.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 373.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 373.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 370.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 367.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 367.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 360.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 360.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 358.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 358.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 357.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 357.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 356.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 356.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 353.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 352.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 349.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 349.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 348.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 345.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 345.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 343.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 343.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 340.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 336.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 336.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 335.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 334.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 330.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 329.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 326.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 324.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 324.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 323.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 322.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 322.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 321.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 321.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 320.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 317.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 317.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 316.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 316.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 315.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 315.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 315.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 314.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 313.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 313.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 312.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 311.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 311.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 310.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 307.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 307.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 307.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 307.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 306.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 306.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 305.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 302.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 302.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 301.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 299.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 299.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 297.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 296.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 296.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 295.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 294.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 293.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 293.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 293.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 292.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 291.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 290.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 285.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 284.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 280.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 280.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 279.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 278.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 277.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 277.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 272.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 268.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 266.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 264.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 264.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 264.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 263.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 260.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 260.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 258.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 258.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 258.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 256.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 254.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 251.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 250.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 249.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 249.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 248.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 247.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 244.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 244.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 242.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 241.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 240.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 240.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 236.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 236.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 236.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 235.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 235.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 234.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 231.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 231.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 230.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 230.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 228.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 226.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 226.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 225.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 225.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 223.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 222.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 222.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 222.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 221.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 220.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 219.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 218.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 216.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 212.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 210.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 208.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 207.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 207.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 206.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 205.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 205.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 204.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 204.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 203.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 201.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 201.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 201.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 201.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 200.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 199.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 199.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 197.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 195.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 195.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 194.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 190.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 190.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 186.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 186.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 181.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 180.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 173.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 171.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 169.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 169.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 167.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 167.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 166.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 162.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 156.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 155.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 154.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 154.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 152.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 151.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 150.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 149.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 149.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 146.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 145.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 144.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 144.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 139.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 137.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 133.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 127.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 126.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 120.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 120.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 119.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 115.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 110.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 99.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 94.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 92.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 89.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 87.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 81.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 75.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 66.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 65.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 63.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 30.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 20.2
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

171.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 171.1
FF:10164-103B2 76 years, female 171.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.4
Pig sample Sample description nTPM
Caudate
nTPM: 126.4
Samples: 4

Max nTPM: 153.8
Min nTPM: 97.9
Sample A Female 97.9
Sample B Female 139.9
Sample C Male 153.8
Sample D Male 114.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org