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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
145.5
nTPM
GTEx:
59.7
nTPM
FANTOM5:
112.8
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA049393
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
145.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 145.5
2621
Female, age 67, right hemisphere
176.4
2148
Female, age 91, left hemisphere
162.8
2529
Female, age 94, left hemisphere
145.1
1898
Male, age 80, left hemisphere
140.2
1911
Female, age 85, right hemisphere
133.0
1855
Male, age 76, left hemisphere
115.3
HIPPOCAMPUS - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
59.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 59.7
Samples: 197
Max nTPM: 200.2
Min nTPM: 4.3
Std nTPM: 30.0
Median nTPM: 59.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
200.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
139.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
127.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
125.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
124.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
117.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
117.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
116.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
112.2
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
107.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
107.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
107.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
105.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
104.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
102.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
100.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
100.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
100.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
99.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
98.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
95.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
94.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
94.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
92.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
92.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
92.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
91.7
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
90.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
89.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
89.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
89.2
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
88.6
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
88.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
87.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
86.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
86.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
86.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
85.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
83.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
83.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
83.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
83.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
82.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
81.7
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
81.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
81.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
80.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
78.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
78.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
77.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
77.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
76.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
76.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
74.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
74.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
73.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
73.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
73.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
73.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
73.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
72.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
72.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
72.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
72.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
71.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
70.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
70.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
69.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
69.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
69.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
69.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
68.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
68.3
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
68.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
68.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
67.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
67.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
67.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
66.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
66.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
66.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
66.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
65.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
65.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
65.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
65.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
64.7
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
63.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
62.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
61.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
61.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
61.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
61.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
61.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
60.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
59.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
59.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
59.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
59.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
59.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
59.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
58.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
58.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
58.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
58.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
58.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
57.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
56.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
55.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
55.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
55.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
54.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
54.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
54.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
54.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
54.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
52.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
52.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
50.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
50.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
50.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
50.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
50.3
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
50.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
49.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
48.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
48.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
48.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
48.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
47.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
46.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
46.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
46.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
45.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
44.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
43.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
43.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
42.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
41.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
41.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
41.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
41.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
40.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
40.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
39.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
39.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
39.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
39.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
39.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
38.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
36.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
34.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
33.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
33.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
32.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
31.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
31.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
31.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
30.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
30.6
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
30.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
29.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
29.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
28.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
27.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
26.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
26.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
25.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
25.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
25.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
24.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
24.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
22.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
21.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
20.9
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
20.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
19.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
18.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
18.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
17.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
17.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
17.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
17.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
17.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
17.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
15.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
15.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
13.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
13.8
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
12.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
11.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
11.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
10.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
9.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
5.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
5.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
4.3
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HIPPOCAMPUS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
