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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:112.2 nTPM
FANTOM5:65.0 Scaled Tags Per Million
Pig:16.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA035638
Glial cells Not detected
Neuronal cells Low


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 112.2
Samples: 246

Max nTPM: 378.0
Min nTPM: 33.4
Std nTPM: 48.7
Median nTPM: 103.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 378.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 274.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 267.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 263.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 230.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 227.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 223.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 222.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 212.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 208.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 207.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 206.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 205.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 204.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 199.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 197.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 195.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 194.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 193.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 191.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 189.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 187.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 185.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 185.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 180.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 179.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 177.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 173.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 169.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 165.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 162.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 161.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 160.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 159.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 158.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 157.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 153.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 151.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 149.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 149.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 148.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 148.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 147.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 146.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 144.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 144.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 143.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 143.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 143.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 142.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 141.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 140.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 140.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 140.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 139.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 139.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 138.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 137.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 137.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 136.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 136.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 135.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 135.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 134.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 134.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 133.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 133.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 133.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 132.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 131.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 131.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 130.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 130.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 130.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 130.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 129.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 128.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 128.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 128.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 128.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 127.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 126.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 126.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 125.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 125.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 124.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 123.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 123.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 123.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 123.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 123.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 122.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 122.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 122.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 121.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 120.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 119.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 118.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 117.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 117.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 116.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 115.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 115.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 115.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 115.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 115.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 113.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 112.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 112.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 111.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 111.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 110.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 110.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 109.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 108.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 108.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 108.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 107.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 106.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 106.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 105.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 105.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 104.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 102.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 102.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 102.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 100.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 100.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 99.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 99.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 99.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 98.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 98.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 97.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 97.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 97.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 97.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 97.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 96.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 95.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 95.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 94.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 94.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 94.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 93.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 93.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 92.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 92.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 92.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 91.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 91.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 91.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 90.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 89.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 89.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 89.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 87.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 87.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 85.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 85.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 84.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 84.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 84.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 84.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 83.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 83.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 82.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 81.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 81.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 81.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 79.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 79.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 78.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 78.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 78.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 78.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 77.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 77.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 76.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 76.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 75.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 74.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 74.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 74.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 74.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 73.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 73.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 72.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 72.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 71.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 71.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 71.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 71.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 70.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 70.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 70.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 70.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 69.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 69.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 68.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 68.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 67.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 66.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 66.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 66.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 66.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 66.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 66.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 65.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 65.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 64.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 64.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 64.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 64.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 63.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 63.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 63.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 63.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 63.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 62.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 61.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 60.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 59.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 59.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 58.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 58.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 58.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 58.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 57.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 57.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 56.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 55.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 55.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 55.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 55.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 54.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 53.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 51.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 51.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 50.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 50.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 49.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 48.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 44.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 36.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 33.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

65.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 65.0
FF:10164-103B2 76 years, female 65.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.6
Pig sample Sample description nTPM
Caudate
nTPM: 16.6
Samples: 4

Max nTPM: 17.9
Min nTPM: 15.7
Sample A Female 17.0
Sample B Female 15.7
Sample C Male 17.9
Sample D Male 15.9

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