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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:136.5 nTPM
FANTOM5:73.5 Scaled Tags Per Million
Pig:113.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003995Antibody HPA005700Antibody HPA030069Antibody CAB002683
Glial cells Not detectedHighLowLow
Neuronal cells Medium-MediumHigh








CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 136.5
Samples: 246

Max nTPM: 245.0
Min nTPM: 71.0
Std nTPM: 31.7
Median nTPM: 134.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 245.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 236.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 232.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 217.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 216.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 213.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 201.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 199.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 198.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 195.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 194.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 192.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 192.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 191.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 188.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 188.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 187.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 186.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 184.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 183.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 183.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 181.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 181.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 181.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 180.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 180.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 178.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 176.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 175.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 174.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 174.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 173.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 172.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 172.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 172.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 172.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 171.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 171.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 170.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 170.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 170.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 168.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 167.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 166.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 166.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 166.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 165.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 165.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 165.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 163.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 163.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 163.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 161.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 160.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 158.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 157.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 157.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 157.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 156.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 156.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 156.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 155.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 155.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 154.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 154.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 154.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 153.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 153.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 153.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 152.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 151.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 151.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 151.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 150.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 149.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 148.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 148.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 148.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 148.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 147.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 147.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 147.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 147.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 147.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 146.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 146.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 144.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 144.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 144.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 144.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 144.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 143.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 143.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 143.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 143.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 142.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 142.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 141.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 141.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 141.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 140.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 140.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 140.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 139.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 139.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 139.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 138.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 138.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 138.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 137.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 137.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 137.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 136.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 136.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 136.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 135.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 135.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 135.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 135.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 134.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 134.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 134.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 134.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 133.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 133.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 132.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 132.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 131.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 131.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 131.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 131.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 131.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 131.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 130.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 130.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 130.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 128.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 127.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 127.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 127.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 127.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 127.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 127.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 126.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 126.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 125.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 125.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 124.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 124.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 123.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 123.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 123.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 123.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 122.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 122.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 122.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 122.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 121.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 121.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 121.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 120.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 120.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 120.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 120.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 119.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 119.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 118.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 118.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 117.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 117.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 116.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 116.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 116.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 115.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 115.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 115.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 115.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 115.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 114.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 114.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 114.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 114.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 113.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 113.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 112.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 111.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 111.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 111.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 110.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 110.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 110.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 109.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 109.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 109.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 109.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 108.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 108.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 108.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 108.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 107.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 107.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 106.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 106.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 105.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 105.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 104.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 104.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 104.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 103.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 103.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 103.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 103.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 103.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 102.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 101.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 101.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 101.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 101.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 100.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 100.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 99.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 99.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 99.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 98.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 97.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 96.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 96.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 95.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 94.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 94.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 94.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 93.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 93.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 92.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 91.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 89.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 89.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 89.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 88.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 86.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 84.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 82.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 81.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 77.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 71.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 71.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

73.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 73.5
FF:10164-103B2 76 years, female 73.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.1
Pig sample Sample description nTPM
Caudate
nTPM: 113.1
Samples: 4

Max nTPM: 140.0
Min nTPM: 93.1
Sample A Female 95.6
Sample B Female 123.8
Sample C Male 140.0
Sample D Male 93.1

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