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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:246.1 nTPM
FANTOM5:239.0 Scaled Tags Per Million
Pig:53.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA059647
Glial cells Not detected
Neuronal cells Medium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 246.1
Samples: 246

Max nTPM: 569.6
Min nTPM: 95.1
Std nTPM: 72.9
Median nTPM: 240.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 569.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 534.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 481.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 460.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 439.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 425.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 413.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 410.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 402.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 400.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 399.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 391.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 373.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 363.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 361.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 357.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 357.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 350.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 348.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 345.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 342.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 341.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 340.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 336.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 334.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 333.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 332.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 322.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 321.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 321.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 319.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 319.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 318.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 316.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 315.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 312.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 312.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 308.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 308.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 308.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 306.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 305.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 304.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 303.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 301.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 300.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 298.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 296.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 295.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 294.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 292.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 292.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 290.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 289.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 289.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 288.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 286.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 286.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 285.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 283.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 283.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 282.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 280.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 279.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 279.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 278.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 277.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 277.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 276.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 275.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 275.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 274.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 274.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 274.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 273.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 272.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 271.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 270.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 268.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 267.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 267.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 266.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 265.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 265.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 264.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 263.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 263.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 262.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 261.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 261.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 259.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 258.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 258.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 256.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 255.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 254.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 254.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 254.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 253.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 253.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 253.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 253.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 253.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 251.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 250.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 250.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 250.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 249.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 248.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 248.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 247.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 247.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 247.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 247.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 246.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 245.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 243.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 243.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 242.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 241.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 241.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 241.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 240.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 240.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 239.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 239.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 237.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 237.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 235.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 234.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 234.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 231.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 230.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 229.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 229.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 229.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 229.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 227.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 227.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 227.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 227.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 227.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 224.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 224.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 223.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 223.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 222.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 222.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 222.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 221.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 219.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 219.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 218.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 218.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 218.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 218.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 217.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 216.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 215.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 215.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 215.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 214.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 213.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 212.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 212.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 211.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 210.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 210.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 209.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 208.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 207.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 206.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 206.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 205.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 205.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 205.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 204.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 204.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 203.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 203.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 202.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 202.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 199.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 199.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 197.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 197.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 197.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 197.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 196.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 195.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 195.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 192.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 191.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 191.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 190.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 190.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 189.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 188.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 188.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 188.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 186.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 186.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 185.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 185.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 185.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 183.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 182.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 182.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 182.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 181.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 180.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 178.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 178.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 177.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 175.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 175.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 173.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 173.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 172.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 171.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 171.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 170.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 169.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 164.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 164.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 159.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 159.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 146.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 146.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 145.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 143.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 142.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 139.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 137.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 132.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 131.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 129.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 125.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 123.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 120.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 119.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 112.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 109.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 101.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 101.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 95.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

239.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 239.0
FF:10164-103B2 76 years, female 239.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.6
Pig sample Sample description nTPM
Caudate
nTPM: 53.6
Samples: 4

Max nTPM: 71.5
Min nTPM: 43.3
Sample A Female 44.0
Sample B Female 55.5
Sample C Male 71.5
Sample D Male 43.3

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