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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:344.4 nTPM
FANTOM5:69.1 Scaled Tags Per Million
Pig:0.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051164
Glial cells Not detected
Neuronal cells Medium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

344.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 344.4
Samples: 246

Max nTPM: 1220.1
Min nTPM: 62.6
Std nTPM: 177.8
Median nTPM: 306.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1220.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 941.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 926.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 845.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 842.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 819.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 813.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 803.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 800.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 788.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 770.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 729.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 722.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 720.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 692.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 670.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 655.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 651.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 639.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 637.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 625.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 606.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 592.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 586.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 585.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 565.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 556.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 552.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 545.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 541.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 540.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 536.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 530.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 515.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 507.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 503.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 503.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 498.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 489.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 481.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 479.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 479.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 476.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 468.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 467.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 464.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 459.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 459.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 454.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 448.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 443.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 438.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 438.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 432.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 432.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 429.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 428.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 428.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 427.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 426.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 420.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 420.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 418.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 418.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 412.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 411.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 411.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 403.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 401.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 401.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 400.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 400.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 398.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 394.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 391.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 390.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 389.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 387.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 386.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 385.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 382.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 381.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 378.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 377.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 372.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 371.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 369.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 360.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 358.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 357.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 354.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 354.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 346.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 346.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 345.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 342.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 341.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 341.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 340.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 340.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 339.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 339.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 339.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 337.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 335.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 334.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 334.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 333.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 331.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 330.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 328.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 328.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 325.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 320.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 319.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 317.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 316.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 315.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 313.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 312.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 311.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 310.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 306.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 306.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 306.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 305.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 304.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 303.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 302.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 301.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 300.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 296.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 293.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 292.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 291.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 291.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 287.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 286.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 286.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 283.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 281.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 280.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 279.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 275.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 273.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 271.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 270.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 270.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 266.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 266.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 266.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 263.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 262.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 260.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 260.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 259.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 249.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 249.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 247.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 247.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 246.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 244.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 242.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 241.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 240.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 239.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 238.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 237.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 234.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 233.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 232.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 231.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 228.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 227.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 225.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 225.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 225.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 223.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 222.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 222.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 222.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 221.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 219.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 218.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 218.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 216.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 212.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 212.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 211.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 211.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 211.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 208.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 208.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 208.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 204.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 203.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 202.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 202.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 201.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 199.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 199.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 198.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 197.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 197.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 197.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 195.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 194.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 193.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 191.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 190.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 188.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 187.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 184.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 183.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 180.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 177.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 175.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 167.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 165.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 165.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 164.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 164.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 162.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 161.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 160.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 157.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 157.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 152.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 150.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 147.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 147.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 145.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 141.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 140.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 136.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 136.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 133.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 130.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 129.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 129.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 127.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 120.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 113.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 102.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 72.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 62.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

69.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 69.1
FF:10164-103B2 76 years, female 69.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.6
Pig sample Sample description nTPM
Caudate
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.9
Sample C Male 0.6
Sample D Male 0.5

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