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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:112.8 nTPM
FANTOM5:235.3 Scaled Tags Per Million
Pig:180.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019086Antibody HPA030619
Glial cells MediumLow
Neuronal cells HighHigh




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 112.8
Samples: 246

Max nTPM: 422.9
Min nTPM: 0.5
Std nTPM: 82.7
Median nTPM: 89.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 422.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 414.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 371.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 362.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 341.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 321.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 318.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 317.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 317.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 314.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 313.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 303.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 290.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 284.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 275.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 271.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 265.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 254.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 248.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 246.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 238.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 237.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 227.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 226.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 223.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 221.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 218.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 217.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 216.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 212.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 209.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 209.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 208.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 201.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 199.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 199.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 198.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 187.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 186.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 185.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 185.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 184.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 180.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 180.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 180.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 177.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 177.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 176.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 175.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 174.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 173.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 168.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 168.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 167.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 167.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 167.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 166.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 165.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 162.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 160.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 157.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 156.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 156.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 155.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 151.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 151.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 150.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 149.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 148.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 145.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 145.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 143.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 141.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 140.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 140.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 140.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 138.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 138.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 134.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 130.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 128.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 125.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 123.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 123.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 122.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 122.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 121.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 120.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 118.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 118.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 118.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 118.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 113.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 113.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 112.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 112.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 111.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 110.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 110.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 109.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 109.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 108.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 107.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 106.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 105.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 105.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 103.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 102.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 102.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 101.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 100.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 99.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 98.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 98.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 98.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 97.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 95.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 95.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 93.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 93.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 92.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 91.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 90.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 89.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 89.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 87.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 87.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 87.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 85.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 85.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 83.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 83.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 82.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 81.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 81.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 80.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 79.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 79.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 77.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 77.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 77.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 76.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 75.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 75.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 75.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 75.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 74.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 73.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 72.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 72.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 71.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 71.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 70.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 70.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 70.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 69.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 69.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 69.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 69.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 68.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 67.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 66.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 65.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 64.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 64.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 64.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 63.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 63.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 63.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 61.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 61.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 60.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 60.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 59.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 57.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 56.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 55.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 52.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 52.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 52.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 52.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 51.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 50.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 50.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 50.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 49.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 49.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 49.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 49.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 47.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 47.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 47.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 46.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 45.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 45.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 45.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 45.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 44.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 43.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 43.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 42.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 42.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 41.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 40.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 40.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 40.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 40.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 39.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 39.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 39.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 37.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 37.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 36.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 35.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 35.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 34.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 32.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 32.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 29.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 28.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 28.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 26.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 26.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 26.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 26.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 25.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 25.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 24.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 24.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 23.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 19.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 19.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 19.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 19.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 17.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 17.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 16.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 15.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 12.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 11.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 11.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 11.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 11.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 6.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 2.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 0.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

235.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 235.3
FF:10164-103B2 76 years, female 235.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

180.1
Pig sample Sample description nTPM
Caudate
nTPM: 180.1
Samples: 4

Max nTPM: 205.6
Min nTPM: 148.4
Sample A Female 176.9
Sample B Female 189.5
Sample C Male 205.6
Sample D Male 148.4

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