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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:383.6 nTPM
FANTOM5:77.7 Scaled Tags Per Million
Pig:154.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA064006
Glial cells Medium
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

383.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 383.6
Samples: 246

Max nTPM: 904.6
Min nTPM: 166.7
Std nTPM: 115.3
Median nTPM: 358.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 904.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 854.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 819.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 766.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 757.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 757.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 684.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 682.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 673.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 658.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 657.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 587.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 568.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 566.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 555.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 549.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 547.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 528.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 528.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 527.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 525.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 521.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 519.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 519.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 514.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 509.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 507.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 506.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 505.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 504.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 500.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 493.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 491.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 487.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 482.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 479.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 478.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 477.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 476.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 474.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 474.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 473.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 472.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 470.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 470.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 468.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 467.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 467.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 466.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 463.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 460.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 458.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 457.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 455.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 449.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 447.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 446.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 442.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 442.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 441.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 441.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 440.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 439.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 439.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 439.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 436.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 436.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 434.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 433.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 430.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 427.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 425.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 418.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 418.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 418.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 418.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 416.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 416.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 415.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 414.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 406.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 406.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 404.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 402.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 400.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 399.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 396.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 394.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 392.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 392.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 392.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 391.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 390.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 389.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 387.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 387.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 387.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 386.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 383.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 381.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 381.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 380.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 378.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 378.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 375.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 375.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 374.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 374.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 374.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 374.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 374.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 372.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 371.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 371.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 371.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 369.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 368.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 363.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 363.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 362.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 360.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 360.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 359.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 358.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 358.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 358.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 357.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 357.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 355.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 353.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 353.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 352.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 352.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 352.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 351.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 351.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 350.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 350.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 348.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 348.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 348.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 345.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 344.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 343.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 343.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 343.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 342.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 340.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 339.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 339.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 338.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 338.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 338.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 337.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 336.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 335.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 335.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 334.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 333.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 333.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 332.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 332.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 331.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 331.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 326.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 326.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 325.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 325.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 324.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 323.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 323.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 322.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 322.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 318.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 317.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 315.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 314.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 312.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 311.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 310.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 309.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 308.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 306.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 304.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 304.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 303.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 301.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 301.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 299.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 297.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 297.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 296.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 295.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 294.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 293.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 292.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 291.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 291.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 290.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 290.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 289.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 289.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 289.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 289.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 288.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 287.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 287.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 285.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 284.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 283.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 282.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 280.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 278.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 276.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 275.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 274.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 273.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 273.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 272.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 271.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 271.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 270.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 268.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 267.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 260.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 259.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 258.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 257.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 256.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 253.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 249.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 248.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 246.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 244.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 241.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 235.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 228.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 226.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 226.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 225.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 222.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 221.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 207.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 192.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 179.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 166.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

77.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 77.7
FF:10164-103B2 76 years, female 77.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.2
Pig sample Sample description nTPM
Caudate
nTPM: 154.2
Samples: 4

Max nTPM: 185.2
Min nTPM: 128.1
Sample A Female 130.3
Sample B Female 173.1
Sample C Male 185.2
Sample D Male 128.1

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