PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Medulla oblongatai 		102.949
Mouse brain, Intensity
Ponsi 		111.320
RNA expressioni
HPA Brain:52.0 nTPM
FANTOM5:93.4 Scaled Tags Per Million
Pig:29.7 nTPM
Mouse:38.3 nTPM
Allen mouse:4.2 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei , antibody HPA028425
Medulla oblongata mean intensity 102.949
intensityi
FRONT BACK
Nucleus of the solitary tract 70.154
Raphe magnus nucleus 26.859
Cochlear nucleus 16.418
Lateral paragigantocellular nucleus 16.561
Raphe pallidus nucleus 28.471
Facial nucleus 29.965
Hypoglossal nucleus 55.500
Ambiguus nucleus 52.526
External cuneate nucleus 29.603
Inferior olivary nucleus 33.600
Raphe obscures nucleus 50.584
Dorsal motor nucleus of vagus 102.949
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 33.767
Parabrachial nucleus 53.132
Principle sensory trigeminal nucleus 19.253
Locus coeruleus 97.489
Pontine nucleus 32.818
Vestibular nucleus 27.512
Pontine reticular nucleus, oral 18.932
Lateral lemniscus 14.716
Superior paraolivary nucleus 14.185

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 52.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 45.4
2090 Male, age 80, both hemispheres 50.1
2301 Female, age 85, both hemispheres 46.0
1984 Male, age 76, both hemispheres 45.9
2188 Female, age 91, both hemispheres 39.5
Area postrema
nTPM: 43.7
2799 Male, age 61, both hemispheres 47.4
2306 Male, age 80, both hemispheres 45.6
2054 Male, age 76, both hemispheres 38.0
Dorsal cochlear nucleus
nTPM: 44.5
2370 Male, age 61, both hemispheres 51.2
2378 Male, age 80, both hemispheres 48.2
2187 Female, age 91, both hemispheres 41.4
2802 Male, age 74, right hemisphere 41.0
2058 Male, age 76, both hemispheres 40.9
Dorsal medullary reticular nucleus
nTPM: 40.5
2088 Male, age 76, both hemispheres 44.6
2373 Male, age 61, both hemispheres 41.6
2040 Female, age 85, both hemispheres 35.2
Dorsal motor vagal complex
nTPM: 42.8
2643 Male, age 74, both hemispheres 55.2
2807 Female, age 85, both hemispheres 43.1
2185 Male, age 76, both hemispheres 42.6
2000 Male, age 74, unknown 41.0
2133 Female, age 91, both hemispheres 40.5
2844 Male, age 55, unknown 40.4
2797 Male, age 61, both hemispheres 40.2
2813 Female, age 72, unknown 39.3
Dorsal tegmental nucleus
nTPM: 43.7
2358 Male, age 61, both hemispheres 54.4
1936 Male, age 76, left hemisphere 42.1
2083 Male, age 80, both hemispheres 40.2
2326 Male, age 74, both hemispheres 38.1
Dorsolateral tegmental area
nTPM: 42.2
2337 Male, age 61, both hemispheres 61.8
2654 Male, age 80, both hemispheres 41.3
2141 Male, age 76, both hemispheres 40.5
2360 Male, age 74, both hemispheres 34.8
2751 Female, age 85, both hemispheres 32.4
Gigantocellular reticular nuclei, medullary
nTPM: 41.7
2462 Male, age 74, both hemispheres 56.8
2310 Male, age 80, both hemispheres 50.7
2387 Female, age 91, both hemispheres 38.6
2314 Male, age 61, both hemispheres 38.5
2022 Male, age 76, right hemisphere 33.8
1876 Female, age 85, both hemispheres 31.5
Gigantocellular reticular nuclei, pars
nTPM: 48.4
2168 Male, age 76, both hemispheres 62.0
2330 Male, age 80, both hemispheres 53.0
2706 Male, age 80, both hemispheres 47.1
2336 Male, age 61, both hemispheres 40.7
2084 Female, age 85, both hemispheres 39.3
Inferior olive
nTPM: 46.5
2085 Female, age 85, both hemispheres 49.3
2628 Female, age 91, both hemispheres 47.8
2379 Male, age 80, both hemispheres 47.0
2178 Male, age 61, both hemispheres 44.6
2563 Male, age 74, both hemispheres 43.9
Kolliker-Fuse nucleus
nTPM: 45.4
2163 Male, age 80, both hemispheres 48.9
2793 Female, age 91, left hemisphere 44.8
2315 Male, age 76, right hemisphere 42.5
Lateral lemniscal nuclei
nTPM: 48.8
2169 Male, age 76, both hemispheres 56.2
2320 Female, age 91, left hemisphere 50.9
2746 Female, age 85, left hemisphere 49.4
2453 Male, age 74, right hemisphere 45.5
2036 Male, age 80, both hemispheres 41.9
Lateral medullary reticular nucleus
nTPM: 43.8
2852 Male, age 80, both hemispheres 46.6
2305 Male, age 74, both hemispheres 46.3
2044 Male, age 76, both hemispheres 44.0
2374 Male, age 61, both hemispheres 42.3
2804 Female, age 91, both hemispheres 42.2
2190 Female, age 85, both hemispheres 41.7
Lateral parabrachial nucleus
nTPM: 42.8
2139 Female, age 85, right hemisphere 48.2
2013 Male, age 80, both hemispheres 44.8
2790 Male, age 61, both hemispheres 41.9
2792 Male, age 76, both hemispheres 36.5
Lateral vestibular nucleus
nTPM: 52.0
2184 Male, age 76, both hemispheres 55.8
2311 Male, age 80, both hemispheres 48.3
Locus coeruleus
nTPM: 41.5
2317 Female, age 72, unknown 49.2
1980 Male, age 76, both hemispheres 45.0
2123 Female, age 91, both hemispheres 44.9
2162 Male, age 80, both hemispheres 43.0
2014 Male, age 55, unknown 39.5
2720 Male, age 74, both hemispheres 37.9
2788 Male, age 74, unknown 31.3
Medial olivary nucleus
nTPM: 41.1
2851 Male, age 80, both hemispheres 46.5
1943 Male, age 61, both hemispheres 42.3
2138 Female, age 91, both hemispheres 38.3
1962 Male, age 76, both hemispheres 37.3
Medial parabrachial nucleus
nTPM: 42.8
2156 Male, age 61, both hemispheres 51.4
2854 Male, age 80, both hemispheres 44.6
2786 Male, age 76, both hemispheres 44.2
2463 Female, age 85, right hemisphere 37.1
2170 Female, age 91, both hemispheres 36.6
Medial periolivary nuclei
nTPM: 51.0
2063 Male, age 76, both hemispheres 60.5
2171 Female, age 85, both hemispheres 58.7
2081 Male, age 80, both hemispheres 49.9
2458 Female, age 91, both hemispheres 48.5
2791 Male, age 74, right hemisphere 37.6
Medial vestibular nucleus
nTPM: 42.8
2624 Male, age 61, both hemispheres 56.6
2134 Male, age 76, both hemispheres 50.7
2093 Male, age 80, both hemispheres 42.3
2743 Female, age 85, both hemispheres 38.1
2801 Male, age 74, both hemispheres 37.1
2803 Female, age 91, both hemispheres 31.7
Motor facial nucleus
nTPM: 47.1
2062 Male, age 76, both hemispheres 62.8
2327 Male, age 80, both hemispheres 45.8
2365 Male, age 74, right hemisphere 45.0
2795 Female, age 91, both hemispheres 44.5
2697 Female, age 85, both hemispheres 42.9
2126 Male, age 61, both hemispheres 41.8
Motor hypoglossal nucleus
nTPM: 43.1
2182 Male, age 80, both hemispheres 54.0
2461 Male, age 61, both hemispheres 42.1
2132 Female, age 85, both hemispheres 41.6
2277 Male, age 76, both hemispheres 38.9
2125 Female, age 91, both hemispheres 38.7
Motor trigeminal nucleus
nTPM: 47.1
2079 Male, age 80, both hemispheres 49.6
2321 Female, age 91, both hemispheres 49.1
2560 Male, age 74, both hemispheres 47.6
2335 Male, age 61, both hemispheres 46.0
2309 Male, age 76, both hemispheres 43.2
Nuclei of the trapezoid body
nTPM: 51.6
1983 Male, age 76, both hemispheres 63.2
2735 Female, age 85, both hemispheres 53.0
2166 Male, age 80, both hemispheres 48.8
2159 Male, age 61, both hemispheres 46.6
2368 Female, age 91, both hemispheres 46.2
Nucleus ambiguus
nTPM: 44.4
2096 Female, age 85, both hemispheres 50.1
2071 Male, age 76, both hemispheres 38.7
Nucleus cuneatus
nTPM: 45.5
2131 Male, age 76, both hemispheres 55.8
2100 Male, age 76, both hemispheres 52.8
2564 Male, age 74, both hemispheres 49.7
2805 Female, age 91, both hemispheres 43.3
2562 Male, age 61, both hemispheres 42.5
2380 Male, age 80, both hemispheres 41.7
2381 Male, age 80, both hemispheres 41.3
2808 Female, age 85, both hemispheres 41.2
2376 Male, age 61, both hemispheres 40.9
Nucleus gracilis
nTPM: 45.5
2299 Female, age 85, both hemispheres 51.2
2627 Male, age 74, both hemispheres 44.2
2382 Male, age 80, both hemispheres 41.1
Nucleus raphe magnus
nTPM: 50.3
2172 Female, age 85, both hemispheres 60.9
2051 Male, age 76, both hemispheres 54.8
2328 Male, age 80, both hemispheres 48.3
2455 Male, age 74, both hemispheres 47.2
2459 Female, age 91, both hemispheres 45.5
2160 Male, age 61, both hemispheres 44.8
Nucleus raphe obscurus
nTPM: 34.9
2845 Female, age 85, midline 36.3
2142 Male, age 76, midline 34.9
2800 Male, age 61, midline 33.6
Nucleus raphe pallidus
nTPM: 42.0
2183 Male, age 80, midline 47.4
1924 Male, age 61, midline 41.7
2145 Male, age 76, midline 36.9
Nucleus tractus solitarii
nTPM: 40.8
2307 Male, age 80, both hemispheres 50.2
2191 Female, age 85, both hemispheres 49.3
2656 Male, age 76, both hemispheres 36.6
2144 Female, age 91, right hemisphere 27.2
Paramedian reticular nucleus
nTPM: 38.1
2313 Male, age 61, both hemispheres 42.8
2050 Female, age 85, both hemispheres 41.0
2057 Male, age 80, both hemispheres 40.6
2052 Male, age 76, both hemispheres 27.9
Parvicellular reticular nuclei
nTPM: 45.1
2558 Male, age 74, both hemispheres 50.7
2095 Male, age 76, both hemispheres 43.6
2119 Male, age 80, both hemispheres 40.9
Parvicellular reticular nuclei, medullary
nTPM: 42.9
2091 Female, age 85, both hemispheres 47.6
2181 Male, age 80, left hemisphere 42.3
2189 Female, age 91, both hemispheres 38.6
Pedunculopontine tegmental nucleus
nTPM: 38.9
2338 Male, age 61, both hemispheres 45.2
2334 Male, age 80, both hemispheres 38.4
1921 Female, age 85, both hemispheres 33.2
Peritrigeminal nucleus
nTPM: 46.6
2067 Female, age 85, both hemispheres 52.6
2136 Male, age 76, both hemispheres 46.3
2179 Male, age 61, both hemispheres 41.1
Pontine nuclei
nTPM: 51.1
2787 Female, age 85, both hemispheres 61.7
1863 Male, age 55, unknown 60.6
1968 Male, age 76, left hemisphere 58.5
2115 Male, age 80, left hemisphere 55.2
2109 Female, age 72, unknown 52.9
2319 Female, age 91, both hemispheres 44.4
2727 Male, age 61, right hemisphere 41.0
2454 Male, age 74, left hemisphere 34.8
Pontine raphe nucleus
nTPM: 42.6
2122 Female, age 85, midline 45.9
2853 Male, age 76, midline 39.2
Posteroventral cochlear nucleus
nTPM: 42.8
2341 Male, age 80, both hemispheres 46.8
2371 Male, age 61, both hemispheres 45.3
2135 Female, age 91, both hemispheres 44.4
2070 Male, age 76, both hemispheres 39.1
2752 Female, age 85, both hemispheres 38.3
Prepositus hypoglossal nucleus
nTPM: 41.9
2086 Male, age 80, both hemispheres 48.4
2855 Female, age 85, right hemisphere 35.4
Principal sensory trigeminal nucleus
nTPM: 47.0
2324 Male, age 76, both hemispheres 54.8
2008 Male, age 80, left hemisphere 45.7
2158 Male, age 61, both hemispheres 44.1
2367 Female, age 91, left hemisphere 43.3
Reticular pontine nucleus, caudal
nTPM: 45.3
2092 Male, age 76, both hemispheres 50.7
2332 Male, age 80, right hemisphere 47.8
2457 Female, age 91, both hemispheres 46.3
2559 Male, age 74, both hemispheres 36.4
Reticular pontine nucleus, oral
nTPM: 37.8
2012 Female, age 85, both hemispheres 41.2
2366 Female, age 91, both hemispheres 39.1
2167 Male, age 76, both hemispheres 37.9
2361 Male, age 74, both hemispheres 36.4
1939 Male, age 80, both hemispheres 34.5
Reticulotegmental nucleus
nTPM: 44.5
2333 Male, age 80, both hemispheres 46.7
2325 Male, age 76, both hemispheres 45.3
2452 Male, age 74, both hemispheres 45.3
2322 Female, age 91, both hemispheres 40.9
Spinal trigeminal nucleus, caudal
nTPM: 46.7
2447 Male, age 76, both hemispheres 50.8
2642 Male, age 74, both hemispheres 49.6
2312 Male, age 61, both hemispheres 45.8
2308 Male, age 80, both hemispheres 44.9
2390 Female, age 91, both hemispheres 42.3
Spinal trigeminal nucleus, interpolar
nTPM: 43.9
2625 Male, age 61, both hemispheres 54.5
2033 Male, age 80, both hemispheres 43.8
2066 Male, age 76, right hemisphere 43.1
2389 Female, age 91, both hemispheres 39.9
2386 Female, age 85, both hemispheres 38.1
Spinal trigeminal nucleus, oral
nTPM: 44.0
2164 Male, age 80, both hemispheres 51.3
2737 Female, age 85, both hemispheres 43.9
1978 Male, age 76, both hemispheres 36.7
Spinal vestibular nucleus
nTPM: 39.6
2796 Male, age 61, both hemispheres 46.4
2780 Male, age 80, both hemispheres 43.2
2748 Male, age 76, both hemispheres 41.6
2186 Female, age 91, both hemispheres 37.4
2384 Male, age 74, both hemispheres 36.3
2806 Female, age 85, both hemispheres 32.8
Subcoeruleus area
nTPM: 41.6
2089 Male, age 76, left hemisphere 52.9
2451 Male, age 74, both hemispheres 45.5
2323 Female, age 91, left hemisphere 39.6
1958 Male, age 80, both hemispheres 38.7
2369 Female, age 85, left hemisphere 31.3
Superior olive
nTPM: 46.4
2561 Female, age 91, both hemispheres 50.0
2329 Male, age 80, right hemisphere 49.9
2020 Male, age 76, both hemispheres 47.4
1875 Female, age 85, both hemispheres 43.2
2364 Male, age 74, right hemisphere 41.8
Superior vestibular nucleus
nTPM: 38.8
2061 Male, age 76, both hemispheres 42.5
2015 Male, age 80, both hemispheres 41.6
2383 Male, age 74, both hemispheres 32.1
Ventral medullary reticular nucleus
nTPM: 42.4
2060 Male, age 76, both hemispheres 45.4
2372 Male, age 61, both hemispheres 39.3
Ventral periolivary nuclei
nTPM: 46.9
2130 Female, age 85, both hemispheres 50.8
2165 Male, age 80, both hemispheres 49.8
2794 Female, age 91, left hemisphere 47.2
2023 Male, age 76, both hemispheres 39.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 47.4
2118 Male, age 80, both hemispheres 54.4
2302 Female, age 91, both hemispheres 52.9
2741 Female, age 85, both hemispheres 47.7
2180 Male, age 61, both hemispheres 41.9
1986 Male, age 76, both hemispheres 40.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 45.6
1959 Male, age 76, both hemispheres 50.7
2161 Male, age 80, both hemispheres 50.6
2456 Female, age 91, both hemispheres 48.2
2449 Male, age 74, both hemispheres 43.9
2840 Female, age 85, both hemispheres 40.8
2359 Male, age 61, both hemispheres 39.2

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 93.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 90.8
FF:10182-103D2 60 years, female 103.4
FF:10165-103B3 76 years, female 78.1
Medulla oblongata
Scaled Tags Per Million: 81.6
FF:10038-101F2 18-64 years, mixed 94.5
FF:10155-103A2 76 years, female 89.8
FF:10174-103C3 60 years, female 60.3
Pons
Scaled Tags Per Million: 93.4
FF:10033-101E6 18-54 years, mixed 93.4

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 29.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 28.6
Samples: 4

Max nTPM: 33.9
Min nTPM: 25.7
Sample A Female 25.7
Sample B Female 27.6
Sample C Male 33.9
Sample D Male 27.0
Pons
nTPM: 29.8
Samples: 4

Max nTPM: 31.8
Min nTPM: 27.0
Sample A Female 27.0
Sample B Female 28.5
Sample C Male 31.7
Sample D Male 31.8

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 38.3
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 38.4
Samples: 4

Max nTPM: 40.9
Min nTPM: 36.9
Sample A Male 37.3
Sample B Male 38.3
Sample C Female 36.9
Sample D Female 40.9

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 4.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.2
75651192 Antisense, RP_060518_01_C09, Mouse strain C57BL/6J (56 days, male) 4.4
68638113 Antisense, RP_050126_02_C04, Mouse strain C57BL/6J (56 days, male) 4.0
Pons
Expression energy: 3.5
75651192 Antisense, RP_060518_01_C09, Mouse strain C57BL/6J (56 days, male) 3.9
68638113 Antisense, RP_050126_02_C04, Mouse strain C57BL/6J (56 days, male) 3.2

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