We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PLIN3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • PLIN3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:14.8 nTPM
FANTOM5:12.2 Scaled Tags Per Million
Pig:7.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006427Antibody HPA066538
Glial cells HighNot detected
Neuronal cells -Not detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.8
Samples: 246

Max nTPM: 42.5
Min nTPM: 2.8
Std nTPM: 6.0
Median nTPM: 14.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 42.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 39.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 33.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 30.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 28.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 27.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 27.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 27.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 26.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 26.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 25.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 25.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 25.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 25.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 24.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 24.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 23.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 23.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 23.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 23.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 23.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 23.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 23.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 23.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 23.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 22.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 22.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 22.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 22.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 22.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 22.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 22.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 21.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 21.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 21.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 21.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 21.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 20.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 20.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 20.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 20.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 20.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 19.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 19.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 19.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 19.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 19.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 19.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 19.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 19.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 19.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 19.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 19.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 19.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 19.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 19.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 19.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 19.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 19.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 19.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 18.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 18.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 18.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 18.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 18.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 18.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 17.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 17.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 17.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 17.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 17.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 17.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 17.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 17.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 17.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 17.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 16.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 16.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 16.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 16.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 16.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 16.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 16.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 16.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 16.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 16.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 16.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 16.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 16.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 15.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 15.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 15.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 15.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 15.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 15.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 15.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 15.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 15.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 15.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 15.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 15.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 15.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 15.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 15.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 15.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 15.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 15.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 15.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 15.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 14.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 14.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 14.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 14.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 14.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 14.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 14.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 14.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 14.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 14.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 14.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 14.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 14.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 14.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 14.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 14.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 13.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 13.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 13.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 13.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 13.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 13.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 13.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 13.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 13.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 13.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 13.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 13.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 12.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 12.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 12.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 12.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 12.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 12.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 12.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 12.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 12.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 12.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 12.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 12.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 12.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 11.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 11.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 11.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 11.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 11.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 11.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 11.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 11.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 11.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 11.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 11.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 11.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 11.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 11.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 11.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 11.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 11.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 11.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 11.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 11.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 11.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 11.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 10.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 10.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 10.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 10.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 10.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 10.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 10.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 10.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 10.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 10.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 10.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 10.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 10.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 10.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 10.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 10.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 10.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 10.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 10.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 10.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 9.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 9.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 9.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 9.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 9.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 9.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 9.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 9.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 9.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 9.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 9.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 9.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 9.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 9.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 9.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 9.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 9.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 9.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 8.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 8.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 8.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 8.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 8.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 8.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 8.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 8.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 8.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 8.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 8.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 8.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 7.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 7.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 7.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 7.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 7.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 7.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 7.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 7.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 7.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 7.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 6.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 6.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 6.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 6.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 6.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 6.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 6.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 5.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 5.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 5.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 5.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 5.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 3.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 2.8
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

12.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 12.2
FF:10164-103B2 76 years, female 12.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.5
Pig sample Sample description nTPM
Caudate
nTPM: 7.5
Samples: 4

Max nTPM: 8.9
Min nTPM: 6.4
Sample A Female 6.4
Sample B Female 8.4
Sample C Male 8.9
Sample D Male 6.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org