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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:115.3 nTPM
FANTOM5:31.2 Scaled Tags Per Million
Pig:25.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA018999
Glial cells Low
Neuronal cells High


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 115.3
Samples: 246

Max nTPM: 251.6
Min nTPM: 32.3
Std nTPM: 33.9
Median nTPM: 109.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 251.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 222.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 206.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 203.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 203.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 201.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 200.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 196.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 192.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 192.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 187.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 181.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 175.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 173.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 173.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 172.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 172.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 172.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 172.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 169.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 167.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 165.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 163.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 162.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 161.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 161.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 160.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 159.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 157.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 156.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 154.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 150.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 149.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 149.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 149.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 149.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 148.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 147.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 147.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 146.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 145.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 145.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 145.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 143.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 143.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 143.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 143.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 142.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 142.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 142.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 142.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 141.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 140.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 137.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 137.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 135.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 135.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 135.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 134.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 134.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 132.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 132.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 132.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 132.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 132.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 131.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 130.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 129.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 129.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 129.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 128.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 128.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 127.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 127.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 127.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 127.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 126.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 126.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 126.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 126.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 125.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 124.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 124.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 124.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 124.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 124.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 123.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 122.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 122.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 121.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 121.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 121.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 121.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 119.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 119.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 119.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 119.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 119.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 118.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 118.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 118.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 116.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 116.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 116.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 115.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 115.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 115.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 114.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 114.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 113.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 113.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 113.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 112.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 112.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 112.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 112.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 112.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 111.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 111.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 110.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 110.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 109.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 109.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 109.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 108.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 108.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 107.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 107.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 107.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 107.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 107.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 106.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 106.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 106.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 106.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 105.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 104.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 104.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 104.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 104.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 104.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 104.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 103.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 103.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 103.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 103.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 103.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 103.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 102.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 102.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 101.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 101.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 101.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 101.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 101.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 100.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 100.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 100.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 99.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 99.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 99.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 99.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 99.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 98.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 98.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 98.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 98.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 97.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 97.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 97.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 97.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 97.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 95.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 95.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 95.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 94.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 94.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 94.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 94.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 92.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 92.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 91.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 91.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 91.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 91.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 91.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 90.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 90.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 90.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 89.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 89.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 89.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 89.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 89.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 89.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 88.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 88.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 88.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 87.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 87.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 87.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 86.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 86.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 86.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 86.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 86.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 86.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 86.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 84.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 84.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 83.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 83.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 83.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 82.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 81.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 81.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 80.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 79.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 79.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 78.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 78.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 78.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 78.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 77.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 77.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 76.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 75.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 73.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 73.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 72.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 72.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 72.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 71.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 71.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 70.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 69.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 68.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 68.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 68.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 65.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 59.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 56.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 49.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 45.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 34.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 32.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

31.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.2
FF:10164-103B2 76 years, female 31.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.9
Pig sample Sample description nTPM
Caudate
nTPM: 25.9
Samples: 4

Max nTPM: 29.5
Min nTPM: 22.7
Sample A Female 22.8
Sample B Female 28.6
Sample C Male 29.5
Sample D Male 22.7

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