We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ETFB
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ETFB
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:158.6 nTPM
FANTOM5:46.3 Scaled Tags Per Million
Pig:94.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA018910Antibody HPA018921Antibody HPA018923
Glial cells HighNot detectedMedium
Neuronal cells MediumLowLow







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 158.6
Samples: 246

Max nTPM: 356.6
Min nTPM: 68.7
Std nTPM: 44.8
Median nTPM: 152.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 356.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 337.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 323.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 309.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 298.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 295.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 288.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 248.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 244.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 239.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 235.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 234.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 234.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 232.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 229.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 222.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 220.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 220.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 219.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 219.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 216.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 214.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 211.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 210.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 209.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 207.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 207.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 205.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 204.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 203.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 202.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 202.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 200.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 199.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 196.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 195.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 195.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 194.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 194.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 194.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 194.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 193.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 193.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 192.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 192.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 192.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 192.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 191.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 190.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 189.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 189.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 188.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 188.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 186.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 185.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 185.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 184.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 184.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 183.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 183.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 183.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 182.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 182.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 180.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 180.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 179.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 178.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 177.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 176.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 176.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 173.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 173.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 172.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 172.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 172.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 172.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 171.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 171.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 171.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 170.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 170.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 170.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 169.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 168.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 168.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 168.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 168.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 168.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 167.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 167.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 167.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 166.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 166.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 166.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 166.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 166.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 165.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 165.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 165.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 164.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 163.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 163.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 163.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 163.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 162.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 162.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 162.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 161.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 161.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 160.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 159.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 158.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 158.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 157.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 157.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 155.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 155.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 155.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 154.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 154.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 154.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 154.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 152.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 152.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 151.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 151.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 151.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 150.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 150.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 149.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 149.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 148.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 148.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 148.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 148.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 148.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 147.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 147.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 147.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 146.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 146.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 146.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 145.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 145.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 144.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 144.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 143.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 143.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 143.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 142.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 141.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 140.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 139.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 138.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 138.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 138.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 138.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 138.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 137.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 137.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 137.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 137.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 136.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 136.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 135.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 135.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 135.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 135.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 134.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 134.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 134.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 134.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 134.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 133.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 133.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 133.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 133.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 132.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 132.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 132.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 131.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 130.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 129.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 129.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 129.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 128.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 128.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 127.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 127.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 127.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 126.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 126.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 125.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 125.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 125.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 124.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 123.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 122.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 122.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 121.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 121.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 121.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 120.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 119.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 119.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 118.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 118.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 117.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 117.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 117.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 117.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 116.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 116.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 115.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 114.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 114.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 114.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 114.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 114.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 114.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 113.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 113.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 111.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 111.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 106.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 104.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 104.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 103.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 103.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 103.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 102.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 101.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 101.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 98.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 97.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 97.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 96.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 93.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 92.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 82.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 80.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 80.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 77.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 73.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 69.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 68.7
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

46.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 46.3
FF:10164-103B2 76 years, female 46.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.6
Pig sample Sample description nTPM
Caudate
nTPM: 94.6
Samples: 4

Max nTPM: 118.7
Min nTPM: 74.5
Sample A Female 74.5
Sample B Female 105.9
Sample C Male 118.7
Sample D Male 79.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org