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  • RAB3A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:139.9 nTPM
FANTOM5:309.5 Scaled Tags Per Million
Pig:468.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003160Antibody CAB009949
Glial cells Not detectedLow
Neuronal cells Not detectedLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 139.9
Samples: 246

Max nTPM: 387.7
Min nTPM: 14.9
Std nTPM: 82.6
Median nTPM: 137.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 387.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 358.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 335.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 332.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 330.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 322.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 312.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 306.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 292.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 289.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 284.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 283.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 282.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 278.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 274.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 273.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 273.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 272.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 267.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 260.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 258.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 254.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 253.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 251.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 248.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 241.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 241.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 235.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 235.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 234.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 232.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 232.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 231.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 230.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 228.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 228.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 227.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 226.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 225.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 222.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 220.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 220.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 219.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 219.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 218.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 217.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 217.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 216.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 216.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 214.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 214.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 213.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 212.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 211.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 210.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 208.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 208.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 206.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 206.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 206.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 204.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 200.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 199.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 199.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 197.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 197.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 195.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 193.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 191.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 191.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 191.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 190.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 190.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 189.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 186.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 186.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 186.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 185.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 184.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 184.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 184.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 183.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 183.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 180.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 178.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 177.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 176.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 175.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 173.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 169.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 167.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 165.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 164.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 164.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 163.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 162.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 161.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 160.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 160.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 160.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 159.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 158.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 154.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 154.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 154.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 153.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 153.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 152.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 152.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 148.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 147.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 147.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 147.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 144.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 144.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 143.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 143.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 142.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 140.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 140.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 140.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 139.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 137.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 136.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 136.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 135.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 132.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 131.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 130.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 129.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 128.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 128.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 128.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 127.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 126.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 126.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 125.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 123.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 123.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 122.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 119.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 118.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 117.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 116.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 116.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 116.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 115.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 114.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 114.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 111.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 109.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 109.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 108.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 105.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 103.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 101.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 101.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 99.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 96.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 96.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 96.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 95.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 95.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 95.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 94.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 93.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 93.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 90.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 89.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 87.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 86.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 85.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 83.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 81.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 75.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 74.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 73.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 73.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 71.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 71.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 68.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 68.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 67.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 65.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 64.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 64.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 63.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 60.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 60.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 59.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 59.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 58.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 56.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 54.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 52.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 51.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 51.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 51.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 50.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 49.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 48.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 48.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 47.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 47.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 45.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 45.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 45.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 44.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 44.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 44.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 43.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 42.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 41.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 39.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 38.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 37.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 36.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 34.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 32.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 31.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 31.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 31.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 30.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 30.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 29.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 28.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 27.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 26.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 25.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 24.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 24.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 24.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 23.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 22.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 22.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 19.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 19.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 19.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 18.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 18.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 18.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 18.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 18.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 16.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 16.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 14.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

309.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 309.5
FF:10164-103B2 76 years, female 309.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

468.0
Pig sample Sample description nTPM
Caudate
nTPM: 468.1
Samples: 4

Max nTPM: 590.7
Min nTPM: 372.5
Sample A Female 372.5
Sample B Female 479.2
Sample C Male 590.7
Sample D Male 429.8

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