We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MAG
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • MAG
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:95.1 nTPM
FANTOM5:94.6 Scaled Tags Per Million
Pig:69.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA012499Antibody CAB009345
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 95.1
Samples: 246

Max nTPM: 329.8
Min nTPM: 14.4
Std nTPM: 57.4
Median nTPM: 83.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 329.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 325.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 266.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 266.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 244.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 234.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 234.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 231.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 229.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 228.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 223.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 223.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 214.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 210.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 208.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 201.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 190.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 190.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 188.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 188.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 180.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 179.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 177.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 174.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 174.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 174.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 170.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 164.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 164.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 163.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 162.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 160.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 159.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 157.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 156.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 154.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 150.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 149.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 149.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 147.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 147.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 144.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 144.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 142.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 141.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 141.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 140.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 139.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 138.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 135.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 131.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 130.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 130.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 130.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 130.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 130.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 129.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 129.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 128.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 128.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 127.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 127.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 127.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 124.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 124.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 122.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 118.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 118.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 118.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 115.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 114.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 114.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 113.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 113.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 112.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 110.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 109.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 109.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 109.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 109.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 109.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 108.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 108.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 107.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 107.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 107.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 106.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 105.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 105.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 104.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 104.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 103.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 101.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 101.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 101.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 101.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 100.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 99.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 99.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 99.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 99.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 98.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 96.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 95.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 95.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 93.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 92.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 91.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 91.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 91.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 91.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 89.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 88.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 88.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 88.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 88.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 87.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 87.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 87.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 84.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 84.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 83.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 83.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 83.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 83.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 81.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 80.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 80.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 78.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 78.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 73.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 72.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 72.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 70.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 70.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 70.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 69.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 69.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 69.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 69.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 68.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 68.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 67.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 67.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 66.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 66.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 65.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 64.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 64.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 64.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 63.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 62.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 62.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 60.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 60.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 60.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 60.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 59.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 59.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 59.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 59.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 58.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 58.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 58.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 57.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 56.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 56.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 56.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 54.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 54.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 54.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 54.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 54.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 54.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 54.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 54.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 53.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 53.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 52.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 52.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 52.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 51.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 51.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 50.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 50.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 50.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 49.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 49.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 49.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 49.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 49.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 49.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 48.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 48.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 48.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 48.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 48.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 47.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 46.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 46.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 46.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 45.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 45.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 45.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 44.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 44.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 43.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 43.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 43.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 42.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 42.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 42.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 41.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 41.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 41.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 41.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 41.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 41.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 40.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 39.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 39.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 37.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 37.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 36.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 36.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 35.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 34.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 34.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 34.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 33.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 33.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 32.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 31.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 30.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 30.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 29.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 29.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 29.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 28.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 28.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 24.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 20.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 20.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 19.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 19.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 14.4
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

94.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 94.6
FF:10164-103B2 76 years, female 94.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.6
Pig sample Sample description nTPM
Caudate
nTPM: 69.6
Samples: 4

Max nTPM: 72.7
Min nTPM: 64.8
Sample A Female 72.7
Sample B Female 64.8
Sample C Male 70.6
Sample D Male 70.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org