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CHCHD2
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  • CHCHD2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:340.4 nTPM
FANTOM5:117.8 Scaled Tags Per Million
Pig:116.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA027407Antibody HPA052510
Glial cells LowLow
Neuronal cells HighMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

340.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 340.4
Samples: 246

Max nTPM: 907.6
Min nTPM: 193.1
Std nTPM: 95.2
Median nTPM: 325.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 907.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 788.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 732.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 728.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 663.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 607.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 606.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 601.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 556.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 531.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 517.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 501.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 491.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 491.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 487.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 486.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 472.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 457.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 454.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 454.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 453.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 451.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 448.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 445.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 444.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 444.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 441.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 436.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 426.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 421.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 420.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 419.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 414.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 411.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 407.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 404.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 403.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 401.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 400.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 399.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 398.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 397.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 395.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 393.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 392.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 389.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 389.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 383.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 383.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 382.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 380.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 378.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 378.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 375.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 374.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 374.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 373.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 373.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 372.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 371.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 369.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 368.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 367.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 367.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 365.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 365.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 364.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 363.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 362.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 362.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 362.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 362.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 359.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 358.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 358.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 358.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 356.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 356.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 355.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 354.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 354.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 352.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 352.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 352.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 351.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 350.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 350.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 349.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 346.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 346.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 345.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 345.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 344.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 344.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 344.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 343.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 343.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 343.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 343.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 342.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 342.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 342.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 341.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 340.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 340.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 339.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 339.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 339.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 338.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 338.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 336.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 335.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 335.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 333.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 331.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 331.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 331.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 330.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 329.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 328.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 327.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 327.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 325.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 325.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 325.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 324.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 323.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 323.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 323.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 323.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 322.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 320.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 317.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 316.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 314.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 314.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 313.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 312.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 312.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 312.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 311.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 311.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 310.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 309.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 308.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 308.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 308.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 306.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 306.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 305.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 305.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 304.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 304.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 303.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 303.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 302.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 300.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 299.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 298.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 297.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 297.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 296.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 296.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 295.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 293.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 292.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 291.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 291.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 291.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 290.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 289.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 289.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 289.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 288.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 288.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 288.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 287.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 287.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 286.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 286.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 285.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 284.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 283.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 283.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 283.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 282.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 281.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 281.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 280.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 279.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 279.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 279.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 279.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 279.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 277.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 272.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 272.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 272.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 272.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 269.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 268.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 268.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 268.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 267.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 266.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 265.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 265.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 265.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 263.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 262.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 261.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 260.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 260.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 259.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 259.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 259.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 257.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 257.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 257.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 254.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 253.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 252.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 248.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 246.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 245.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 243.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 242.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 241.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 241.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 239.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 238.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 237.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 236.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 234.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 231.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 229.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 222.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 221.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 218.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 217.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 213.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 211.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 211.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 210.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 200.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 193.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

117.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 117.8
FF:10164-103B2 76 years, female 117.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.0
Pig sample Sample description nTPM
Caudate
nTPM: 116.0
Samples: 4

Max nTPM: 130.7
Min nTPM: 98.2
Sample A Female 98.2
Sample B Female 130.7
Sample C Male 127.8
Sample D Male 107.1

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