PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:223.1 nTPM
FANTOM5:219.9 Scaled Tags Per Million
Pig:85.6 nTPM
Mouse:32.4 nTPM
Allen mouse:4.3 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 223.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 132.9
2188 Female, age 91, both hemispheres 180.0
2090 Male, age 80, both hemispheres 132.0
2301 Female, age 85, both hemispheres 111.5
1984 Male, age 76, both hemispheres 108.1
Area postrema
nTPM: 118.9
2306 Male, age 80, both hemispheres 138.0
2054 Male, age 76, both hemispheres 132.4
2799 Male, age 61, both hemispheres 86.3
Dorsal cochlear nucleus
nTPM: 116.2
2802 Male, age 74, right hemisphere 141.2
2187 Female, age 91, both hemispheres 129.4
2378 Male, age 80, both hemispheres 116.8
2058 Male, age 76, both hemispheres 98.6
2370 Male, age 61, both hemispheres 95.1
Dorsal medullary reticular nucleus
nTPM: 132.0
2040 Female, age 85, both hemispheres 149.0
2088 Male, age 76, both hemispheres 128.0
2373 Male, age 61, both hemispheres 119.0
Dorsal motor vagal complex
nTPM: 121.1
2133 Female, age 91, both hemispheres 217.5
2000 Male, age 74, unknown 183.1
2844 Male, age 55, unknown 118.0
2185 Male, age 76, both hemispheres 111.2
2807 Female, age 85, both hemispheres 98.0
2643 Male, age 74, both hemispheres 95.0
2813 Female, age 72, unknown 80.8
2797 Male, age 61, both hemispheres 64.9
Dorsal tegmental nucleus
nTPM: 102.1
2083 Male, age 80, both hemispheres 130.5
2326 Male, age 74, both hemispheres 122.8
1936 Male, age 76, left hemisphere 89.9
2358 Male, age 61, both hemispheres 65.1
Dorsolateral tegmental area
nTPM: 105.1
2751 Female, age 85, both hemispheres 140.7
2654 Male, age 80, both hemispheres 131.2
2360 Male, age 74, both hemispheres 92.4
2337 Male, age 61, both hemispheres 88.6
2141 Male, age 76, both hemispheres 72.8
Gigantocellular reticular nuclei, medullary
nTPM: 136.1
2387 Female, age 91, both hemispheres 155.4
1876 Female, age 85, both hemispheres 147.8
2314 Male, age 61, both hemispheres 139.3
2462 Male, age 74, both hemispheres 134.6
2022 Male, age 76, right hemisphere 119.9
2310 Male, age 80, both hemispheres 119.6
Gigantocellular reticular nuclei, pars
nTPM: 130.7
2706 Male, age 80, both hemispheres 140.1
2168 Male, age 76, both hemispheres 138.1
2330 Male, age 80, both hemispheres 129.9
2336 Male, age 61, both hemispheres 128.9
2084 Female, age 85, both hemispheres 116.4
Inferior olive
nTPM: 117.1
2178 Male, age 61, both hemispheres 147.1
2628 Female, age 91, both hemispheres 118.1
2085 Female, age 85, both hemispheres 112.6
2563 Male, age 74, both hemispheres 106.5
2379 Male, age 80, both hemispheres 101.3
Kolliker-Fuse nucleus
nTPM: 182.3
2163 Male, age 80, both hemispheres 276.1
2793 Female, age 91, left hemisphere 191.6
2315 Male, age 76, right hemisphere 79.3
Lateral lemniscal nuclei
nTPM: 161.4
2320 Female, age 91, left hemisphere 170.3
2746 Female, age 85, left hemisphere 168.8
2453 Male, age 74, right hemisphere 168.4
2036 Male, age 80, both hemispheres 164.2
2169 Male, age 76, both hemispheres 135.5
Lateral medullary reticular nucleus
nTPM: 128.7
2852 Male, age 80, both hemispheres 144.9
2305 Male, age 74, both hemispheres 140.5
2044 Male, age 76, both hemispheres 138.2
2374 Male, age 61, both hemispheres 122.3
2190 Female, age 85, both hemispheres 120.9
2804 Female, age 91, both hemispheres 105.6
Lateral parabrachial nucleus
nTPM: 142.6
2792 Male, age 76, both hemispheres 157.9
2013 Male, age 80, both hemispheres 147.5
2790 Male, age 61, both hemispheres 136.4
2139 Female, age 85, right hemisphere 128.6
Lateral vestibular nucleus
nTPM: 196.4
2184 Male, age 76, both hemispheres 288.4
2311 Male, age 80, both hemispheres 104.3
Locus coeruleus
nTPM: 123.8
2014 Male, age 55, unknown 148.9
2788 Male, age 74, unknown 137.9
2123 Female, age 91, both hemispheres 132.8
2162 Male, age 80, both hemispheres 117.1
2720 Male, age 74, both hemispheres 114.7
1980 Male, age 76, both hemispheres 107.7
2317 Female, age 72, unknown 107.5
Medial olivary nucleus
nTPM: 143.8
1943 Male, age 61, both hemispheres 174.5
1962 Male, age 76, both hemispheres 163.0
2851 Male, age 80, both hemispheres 126.2
2138 Female, age 91, both hemispheres 111.4
Medial parabrachial nucleus
nTPM: 119.6
2156 Male, age 61, both hemispheres 141.0
2463 Female, age 85, right hemisphere 128.1
2854 Male, age 80, both hemispheres 124.3
2170 Female, age 91, both hemispheres 106.4
2786 Male, age 76, both hemispheres 98.1
Medial periolivary nuclei
nTPM: 155.2
2081 Male, age 80, both hemispheres 175.6
2458 Female, age 91, both hemispheres 161.0
2791 Male, age 74, right hemisphere 152.6
2063 Male, age 76, both hemispheres 144.0
2171 Female, age 85, both hemispheres 142.7
Medial vestibular nucleus
nTPM: 159.9
2134 Male, age 76, both hemispheres 232.5
2624 Male, age 61, both hemispheres 197.9
2803 Female, age 91, both hemispheres 156.0
2801 Male, age 74, both hemispheres 146.4
2093 Male, age 80, both hemispheres 137.6
2743 Female, age 85, both hemispheres 89.3
Motor facial nucleus
nTPM: 145.1
2365 Male, age 74, right hemisphere 167.5
2126 Male, age 61, both hemispheres 156.3
2697 Female, age 85, both hemispheres 143.2
2062 Male, age 76, both hemispheres 143.1
2327 Male, age 80, both hemispheres 134.1
2795 Female, age 91, both hemispheres 126.1
Motor hypoglossal nucleus
nTPM: 161.7
2461 Male, age 61, both hemispheres 223.1
2132 Female, age 85, both hemispheres 189.1
2125 Female, age 91, both hemispheres 170.3
2182 Male, age 80, both hemispheres 129.6
2277 Male, age 76, both hemispheres 96.5
Motor trigeminal nucleus
nTPM: 132.3
2079 Male, age 80, both hemispheres 161.0
2560 Male, age 74, both hemispheres 159.8
2321 Female, age 91, both hemispheres 134.7
2309 Male, age 76, both hemispheres 116.3
2335 Male, age 61, both hemispheres 89.9
Nuclei of the trapezoid body
nTPM: 156.5
2159 Male, age 61, both hemispheres 215.8
2166 Male, age 80, both hemispheres 152.7
2368 Female, age 91, both hemispheres 149.8
1983 Male, age 76, both hemispheres 135.2
2735 Female, age 85, both hemispheres 128.8
Nucleus ambiguus
nTPM: 124.9
2071 Male, age 76, both hemispheres 140.1
2096 Female, age 85, both hemispheres 109.8
Nucleus cuneatus
nTPM: 123.7
2100 Male, age 76, both hemispheres 152.6
2380 Male, age 80, both hemispheres 147.3
2131 Male, age 76, both hemispheres 133.2
2808 Female, age 85, both hemispheres 131.1
2381 Male, age 80, both hemispheres 128.1
2376 Male, age 61, both hemispheres 115.2
2805 Female, age 91, both hemispheres 113.2
2564 Male, age 74, both hemispheres 105.6
2562 Male, age 61, both hemispheres 86.9
Nucleus gracilis
nTPM: 138.4
2382 Male, age 80, both hemispheres 170.7
2299 Female, age 85, both hemispheres 131.6
2627 Male, age 74, both hemispheres 112.9
Nucleus raphe magnus
nTPM: 162.4
2160 Male, age 61, both hemispheres 208.8
2459 Female, age 91, both hemispheres 179.3
2051 Male, age 76, both hemispheres 158.1
2328 Male, age 80, both hemispheres 150.5
2455 Male, age 74, both hemispheres 145.9
2172 Female, age 85, both hemispheres 132.0
Nucleus raphe obscurus
nTPM: 149.9
2142 Male, age 76, midline 158.7
2845 Female, age 85, midline 148.2
2800 Male, age 61, midline 142.9
Nucleus raphe pallidus
nTPM: 163.7
1924 Male, age 61, midline 186.2
2145 Male, age 76, midline 177.4
2183 Male, age 80, midline 127.5
Nucleus tractus solitarii
nTPM: 125.2
2144 Female, age 91, right hemisphere 199.1
2191 Female, age 85, both hemispheres 143.1
2656 Male, age 76, both hemispheres 80.7
2307 Male, age 80, both hemispheres 77.8
Paramedian reticular nucleus
nTPM: 142.8
2052 Male, age 76, both hemispheres 149.3
2057 Male, age 80, both hemispheres 145.2
2050 Female, age 85, both hemispheres 144.0
2313 Male, age 61, both hemispheres 132.8
Parvicellular reticular nuclei
nTPM: 146.4
2558 Male, age 74, both hemispheres 170.7
2095 Male, age 76, both hemispheres 140.8
2119 Male, age 80, both hemispheres 127.8
Parvicellular reticular nuclei, medullary
nTPM: 170.2
2091 Female, age 85, both hemispheres 230.1
2189 Female, age 91, both hemispheres 164.0
2181 Male, age 80, left hemisphere 116.4
Pedunculopontine tegmental nucleus
nTPM: 107.3
2334 Male, age 80, both hemispheres 116.7
2338 Male, age 61, both hemispheres 103.9
1921 Female, age 85, both hemispheres 101.2
Peritrigeminal nucleus
nTPM: 123.3
2179 Male, age 61, both hemispheres 135.2
2136 Male, age 76, both hemispheres 129.5
2067 Female, age 85, both hemispheres 105.1
Pontine nuclei
nTPM: 178.9
2727 Male, age 61, right hemisphere 271.4
2454 Male, age 74, left hemisphere 199.2
2319 Female, age 91, both hemispheres 174.0
1863 Male, age 55, unknown 170.6
2115 Male, age 80, left hemisphere 168.0
1968 Male, age 76, left hemisphere 161.2
2109 Female, age 72, unknown 146.3
2787 Female, age 85, both hemispheres 140.4
Pontine raphe nucleus
nTPM: 113.7
2122 Female, age 85, midline 129.6
2853 Male, age 76, midline 97.8
Posteroventral cochlear nucleus
nTPM: 150.9
2135 Female, age 91, both hemispheres 201.3
2341 Male, age 80, both hemispheres 172.8
2070 Male, age 76, both hemispheres 138.7
2752 Female, age 85, both hemispheres 131.5
2371 Male, age 61, both hemispheres 110.4
Prepositus hypoglossal nucleus
nTPM: 132.1
2855 Female, age 85, right hemisphere 181.5
2086 Male, age 80, both hemispheres 82.7
Principal sensory trigeminal nucleus
nTPM: 185.3
2324 Male, age 76, both hemispheres 219.4
2158 Male, age 61, both hemispheres 186.2
2367 Female, age 91, left hemisphere 177.7
2008 Male, age 80, left hemisphere 158.0
Reticular pontine nucleus, caudal
nTPM: 166.2
2457 Female, age 91, both hemispheres 189.4
2559 Male, age 74, both hemispheres 180.5
2092 Male, age 76, both hemispheres 148.0
2332 Male, age 80, right hemisphere 147.0
Reticular pontine nucleus, oral
nTPM: 147.8
2366 Female, age 91, both hemispheres 186.7
2361 Male, age 74, both hemispheres 184.8
2012 Female, age 85, both hemispheres 137.4
1939 Male, age 80, both hemispheres 124.5
2167 Male, age 76, both hemispheres 105.5
Reticulotegmental nucleus
nTPM: 126.4
2452 Male, age 74, both hemispheres 140.6
2322 Female, age 91, both hemispheres 139.3
2333 Male, age 80, both hemispheres 116.1
2325 Male, age 76, both hemispheres 109.4
Spinal trigeminal nucleus, caudal
nTPM: 162.6
2390 Female, age 91, both hemispheres 339.4
2447 Male, age 76, both hemispheres 135.1
2312 Male, age 61, both hemispheres 123.0
2308 Male, age 80, both hemispheres 111.0
2642 Male, age 74, both hemispheres 104.5
Spinal trigeminal nucleus, interpolar
nTPM: 223.1
2625 Male, age 61, both hemispheres 582.4
2389 Female, age 91, both hemispheres 148.2
2033 Male, age 80, both hemispheres 144.6
2386 Female, age 85, both hemispheres 122.8
2066 Male, age 76, right hemisphere 117.6
Spinal trigeminal nucleus, oral
nTPM: 183.4
2164 Male, age 80, both hemispheres 255.5
2737 Female, age 85, both hemispheres 178.6
1978 Male, age 76, both hemispheres 116.0
Spinal vestibular nucleus
nTPM: 139.1
2384 Male, age 74, both hemispheres 171.8
2806 Female, age 85, both hemispheres 150.6
2186 Female, age 91, both hemispheres 146.4
2748 Male, age 76, both hemispheres 141.7
2780 Male, age 80, both hemispheres 129.0
2796 Male, age 61, both hemispheres 94.9
Subcoeruleus area
nTPM: 124.7
2369 Female, age 85, left hemisphere 171.7
1958 Male, age 80, both hemispheres 123.0
2089 Male, age 76, left hemisphere 122.6
2451 Male, age 74, both hemispheres 114.3
2323 Female, age 91, left hemisphere 91.7
Superior olive
nTPM: 153.9
2020 Male, age 76, both hemispheres 161.7
1875 Female, age 85, both hemispheres 156.4
2561 Female, age 91, both hemispheres 156.2
2329 Male, age 80, right hemisphere 148.4
2364 Male, age 74, right hemisphere 146.9
Superior vestibular nucleus
nTPM: 113.7
2015 Male, age 80, both hemispheres 155.5
2383 Male, age 74, both hemispheres 95.4
2061 Male, age 76, both hemispheres 90.3
Ventral medullary reticular nucleus
nTPM: 131.7
2372 Male, age 61, both hemispheres 131.9
2060 Male, age 76, both hemispheres 131.4
Ventral periolivary nuclei
nTPM: 149.9
2023 Male, age 76, both hemispheres 169.6
2165 Male, age 80, both hemispheres 155.5
2794 Female, age 91, left hemisphere 143.4
2130 Female, age 85, both hemispheres 131.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 126.9
2180 Male, age 61, both hemispheres 138.4
1986 Male, age 76, both hemispheres 131.7
2118 Male, age 80, both hemispheres 129.6
2741 Female, age 85, both hemispheres 121.0
2302 Female, age 91, both hemispheres 114.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 147.7
2840 Female, age 85, both hemispheres 177.5
2449 Male, age 74, both hemispheres 158.2
2456 Female, age 91, both hemispheres 154.5
2161 Male, age 80, both hemispheres 144.2
1959 Male, age 76, both hemispheres 143.0
2359 Male, age 61, both hemispheres 109.0

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 219.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 219.9
FF:10182-103D2 60 years, female 249.8
FF:10165-103B3 76 years, female 190.0
Medulla oblongata
Scaled Tags Per Million: 129.2
FF:10155-103A2 76 years, female 162.9
FF:10038-101F2 18-64 years, mixed 124.1
FF:10174-103C3 60 years, female 100.5
Pons
Scaled Tags Per Million: 154.1
FF:10033-101E6 18-54 years, mixed 154.1

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 85.6
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 82.9
Samples: 4

Max nTPM: 103.3
Min nTPM: 59.0
Sample A Female 103.3
Sample B Female 100.7
Sample C Male 59.0
Sample D Male 68.4
Pons
nTPM: 85.6
Samples: 4

Max nTPM: 105.2
Min nTPM: 72.1
Sample A Female 105.2
Sample B Female 72.1
Sample C Male 78.6
Sample D Male 86.4

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 32.4
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 32.4
Samples: 4

Max nTPM: 33.8
Min nTPM: 30.1
Sample A Male 32.8
Sample B Male 33.8
Sample C Female 30.1
Sample D Female 32.8

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 4.3
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.3
71809205 Antisense, RP_051005_01_G04, Mouse strain C57BL/6J (56 days, male) 8.1
74363335 Antisense, RP_051005_01_G04, Mouse strain C57BL/6J (56 days, male) 5.0
77874616 Antisense, RP_070219_02_B01, Mouse strain C57BL/6J (56 days, male) 2.9
58 Antisense, RP_Baylor_103297, Mouse strain C57BL/6J (56 days, male) 1.8
57 Antisense, RP_Baylor_103297, Mouse strain C57BL/6J (56 days, male) 0.5
Pons
Expression energy: 2.4
71809205 Antisense, RP_051005_01_G04, Mouse strain C57BL/6J (56 days, male) 7.1
74363335 Antisense, RP_051005_01_G04, Mouse strain C57BL/6J (56 days, male) 4.1
77874616 Antisense, RP_070219_02_B01, Mouse strain C57BL/6J (56 days, male) 1.6
58 Antisense, RP_Baylor_103297, Mouse strain C57BL/6J (56 days, male) 0.9
57 Antisense, RP_Baylor_103297, Mouse strain C57BL/6J (56 days, male) 0.7
59 Sense, RPS_Baylor_37104, Mouse strain C57BL/6J (56 days, male) 0.0

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