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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:80.1 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Pig:80.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA009163Antibody HPA009269
Glial cells LowMedium
Neuronal cells LowMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 80.1
Samples: 246

Max nTPM: 214.4
Min nTPM: 21.3
Std nTPM: 33.2
Median nTPM: 72.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 214.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 202.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 192.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 191.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 181.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 178.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 178.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 168.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 162.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 156.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 151.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 149.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 140.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 140.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 138.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 137.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 136.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 133.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 132.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 131.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 127.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 127.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 126.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 122.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 122.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 120.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 119.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 116.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 116.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 115.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 114.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 113.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 113.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 112.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 112.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 112.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 111.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 109.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 108.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 108.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 108.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 107.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 107.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 105.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 104.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 102.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 102.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 102.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 101.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 101.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 101.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 100.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 100.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 100.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 100.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 99.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 98.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 98.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 98.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 97.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 96.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 96.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 96.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 95.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 95.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 94.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 94.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 93.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 93.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 93.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 92.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 92.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 92.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 92.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 91.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 91.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 90.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 90.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 89.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 89.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 88.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 87.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 87.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 87.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 86.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 86.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 85.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 85.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 85.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 85.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 84.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 83.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 82.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 82.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 82.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 81.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 81.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 80.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 80.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 80.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 79.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 79.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 79.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 78.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 78.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 78.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 78.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 78.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 77.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 77.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 77.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 76.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 76.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 76.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 75.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 75.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 75.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 75.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 73.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 73.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 73.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 73.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 72.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 71.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 71.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 70.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 70.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 69.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 69.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 69.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 69.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 68.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 68.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 67.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 67.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 67.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 67.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 67.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 67.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 66.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 66.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 66.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 66.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 66.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 66.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 65.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 65.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 65.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 64.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 64.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 63.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 63.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 63.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 63.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 62.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 62.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 62.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 62.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 62.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 62.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 62.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 61.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 61.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 61.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 61.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 61.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 61.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 60.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 60.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 60.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 60.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 59.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 59.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 59.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 59.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 58.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 58.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 57.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 57.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 57.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 56.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 56.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 56.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 55.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 55.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 55.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 55.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 55.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 54.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 54.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 54.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 54.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 53.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 53.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 53.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 53.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 53.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 53.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 53.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 53.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 53.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 52.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 52.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 52.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 51.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 51.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 51.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 50.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 50.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 50.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 50.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 49.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 49.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 49.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 49.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 48.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 48.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 48.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 47.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 47.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 47.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 47.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 46.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 46.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 45.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 45.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 44.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 44.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 44.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 44.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 43.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 43.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 42.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 40.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 40.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 40.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 39.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 39.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 37.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 36.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 36.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 36.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 35.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 33.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 27.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 21.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 72.5
FF:10164-103B2 76 years, female 72.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.0
Pig sample Sample description nTPM
Caudate
nTPM: 80.1
Samples: 4

Max nTPM: 98.3
Min nTPM: 64.5
Sample A Female 64.5
Sample B Female 89.2
Sample C Male 98.3
Sample D Male 68.2

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